View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_29 (Length: 239)
Name: NF9399_low_29
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37561407 - 37561632
Alignment:
| Q |
1 |
atcaagttgcagacataatgaccaaaccattgaagcttgaagtttttcagaaccttagaaagctgctgggagtatgtgacatttctgatttaaactagtt |
100 |
Q |
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| T |
37561407 |
atcaagttgcagacataatgaccaaaccattgaagcttgaagtttttcagaaccttagaaagctgctgggagtatgtgacatttctgatttaaactagtt |
37561506 |
T |
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| Q |
101 |
ggtgtacaacatttagtttaagggagggaatgaaagagttaaagtagtatttttatgttagaataaaatcctagtttataggagaggacttagtctttaa |
200 |
Q |
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| T |
37561507 |
gctgtacaacatttagtttaagggagggaatgaaagagttaaagtagtatttgtctgttagaataaaatcctagtttataggataggacttggtctttaa |
37561606 |
T |
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| Q |
201 |
gaaattaatttgtatttgttttaatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37561607 |
gaaattaatttgtatttgttttaatt |
37561632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 37557199 - 37557294
Alignment:
| Q |
131 |
tgaaagagttaaagtagtatttttatgttagaataaaatcctagtttataggagaggacttagtctttaagaaattaatttgtatttgttttaatt |
226 |
Q |
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| T |
37557199 |
tgaaagagttaaagtagtatttgtctgttagaataaaatcctagtttataggagaggacttggtctttaagaaattaatttgtatttgttttaatt |
37557294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 21469977 - 21469907
Alignment:
| Q |
156 |
tgttagaataaaatcctagtttataggagaggacttagtctttaagaaattaatttgtatttgttttaatt |
226 |
Q |
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| T |
21469977 |
tgttagaataaaattctagtttataggagaagacttagtctttatgaatttaatttttatttgttttaatt |
21469907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 30741824 - 30741763
Alignment:
| Q |
161 |
gaataaaatcctagtttataggagaggacttagtctttaagaaattaatttgtatttgtttt |
222 |
Q |
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|||||| |||||||||||||||| | || || ||||||| |||||||||||||||||||||| |
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| T |
30741824 |
gaataacatcctagtttataggaaaagatttggtctttaggaaattaatttgtatttgtttt |
30741763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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