View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_3 (Length: 515)
Name: NF9399_low_3
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_3 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 113 - 498
Target Start/End: Original strand, 16673 - 17055
Alignment:
| Q |
113 |
ccggggatggcctaggcggtggaggttgtaatgatgggggcggtggtgatggggggtgtggcctcnnnnnnnnnnnttgcggcgggtttttagggggtgg |
212 |
Q |
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| T |
16673 |
ccggggatggcctaggcggtgtaggttgtaatgatggtggcggtgatgatggtggttgtggcctaggaggtggagtttgagacgagtttttagggggtgg |
16772 |
T |
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| Q |
213 |
tggaggtgaacgtctgggtggtgtaacagcaggaggagggggtgaattgtcgggtggaggcgaggttcttggcggaacgggtgattgtggtggcggtggt |
312 |
Q |
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| T |
16773 |
tggaggtgaacgtctgggtggtgtaacagtaggaggagggggtgaattgtccggtggaggcgaggttcttggcggaacgggtgattgtggtggcggtggc |
16872 |
T |
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| Q |
313 |
ggaggccgtgctggcggggttagagtaggagctacagcaggcggcgacggagttgaagcacggggaactggtgaagtcggagtaggagaaggcacggctg |
412 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16873 |
ggaggccgtgttggcggggttagagtaggagctacaggaggcggcgacggagttgaagcacggggaactggtgaagtcggagtaggagacggcacggctg |
16972 |
T |
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| Q |
413 |
gaggaggagctgaaagaggtggtgatgttgctggttgttgcggtggcggagcagtggctgaggaaggtggctgggtggtattagag |
498 |
Q |
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| T |
16973 |
gaggaggagctgaaaga---ggtgcagctgatggttgttgcggtggcggagcagtggctgaggaaggtggctgggtggtattagag |
17055 |
T |
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