View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_5 (Length: 475)
Name: NF9399_low_5
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 37561415 - 37560957
Alignment:
| Q |
1 |
caacttgatcttgactcccataatgaagtagttcaattttaccctctttagtaagatttcttaagaaatgaaatctcacatcaatatgcttgctgcgacc |
100 |
Q |
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| T |
37561415 |
caacttgatcttgactcccacaatgaagtagttcaattttaccctctttagtaagatttcttaagaaatgaaatctcacatcaatatgcttgctgcgacc |
37561316 |
T |
|
| Q |
101 |
atgcataaccggatttttagacagcttgattgttgagctattatcacacatcacatttattccatttccacaagtatgtccaagctcctctaaaattctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561315 |
atgcataaccggatttttagacagcttgattgttgagctattatcacacatcacatttattccatttccacaagtatgtccaagctcctctaaaattctc |
37561216 |
T |
|
| Q |
201 |
ttcatccatattccttgacaaacagatattgcagcaactacaaactcagcttccgtagtcgacaaagtcacaataggctgtgttttttaacaccatgaaa |
300 |
Q |
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||||||||||||||||||||||| ||| ||||||| | ||||||||||||| ||||||||||||||||| |||||||||| ||||| | |||||||||| |
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| T |
37561215 |
ttcatccatattccttgacaaacgcatactgcagcagccacaaactcagctttcgtagtcgacaaagtcaaaataggctgtttttttgagcaccatgaaa |
37561116 |
T |
|
| Q |
301 |
caaccccagaactcattaagaatacataaccagatgtactcttcctatcatccacatctccggcatagtcgctatctgtgaacgctaacagcttgccttc |
400 |
Q |
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| T |
37561115 |
cagcccctgaactcattaagaatacataaccagatgtactcttcctatcatccacgtctccggcatagtcgctatctgtgaacgctaacagcttgccttc |
37561016 |
T |
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| Q |
401 |
tcctcctttcttatattgaagtccatagttcacagtcccttttaaatatcgaagtgctc |
459 |
Q |
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| T |
37561015 |
tcctcctttcttataatgaagtccatagttcacagtcccttttaaatatcgaagtgctc |
37560957 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 47144792 - 47144702
Alignment:
| Q |
59 |
tcttaagaaatgaaatctcacatcaatatgcttgctgcgaccatgcataaccggatttttagacagcttgattgttgagctattatcacac |
149 |
Q |
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||||||||||||||| |||||||| |||||||||| | ||||||||||| ||||| ||||| ||||| |||| ||||||||| |||||| |
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| T |
47144792 |
tcttaagaaatgaaacctcacatctatatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctattgtcacac |
47144702 |
T |
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