View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9399_low_7 (Length: 443)
Name: NF9399_low_7
Description: NF9399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9399_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 46894154 - 46894498
Alignment:
| Q |
1 |
agcagagatcgcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaa |
100 |
Q |
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| T |
46894154 |
agcagagatcgcaaggcatgattggtgaatgttctttttccaaaatcaagctactacatgtactattcccagctttgcatccatcaatgtcacagagcaa |
46894253 |
T |
|
| Q |
101 |
atcggattctgcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccag |
200 |
Q |
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| T |
46894254 |
atcggattctgcctcttcttctaactcaaactgtctgagaaggctatcatcgcctagaggattcgtattgcctctaggattcatgttgcctacaatccag |
46894353 |
T |
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| Q |
201 |
aacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgnnnnnnngtttgactattgtt |
300 |
Q |
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| T |
46894354 |
aacaagcttattttttatatggcactataataatctaaagaaacataataaactcaacgaatttataaggatcatattgtttttttgtttgactattgtt |
46894453 |
T |
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| Q |
301 |
cttaccaaatcactttttgaaacatttcaataaacaaaatatttt |
345 |
Q |
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| T |
46894454 |
cttaccaaatcactttttgaaacatttcaataaacataatatttt |
46894498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 343 - 428
Target Start/End: Original strand, 46894561 - 46894646
Alignment:
| Q |
343 |
tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatgtc |
428 |
Q |
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| T |
46894561 |
tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatgtc |
46894646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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