View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9400_high_4 (Length: 288)
Name: NF9400_high_4
Description: NF9400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9400_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 49392371 - 49392098
Alignment:
| Q |
15 |
gacatcatacgagactgagatacgacgagggagaaacagacacaagagttgatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaag |
114 |
Q |
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| T |
49392371 |
gacatcatacgagactgagatacgatgagggagaaacagacacaagagtttatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaag |
49392272 |
T |
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| Q |
115 |
agaacgagtgtccattgaaagggtggtggtcgctgttgcgatggcggttgtaacgaggatggtgggggaaagaaaatacacgcagtaaagaaaggaggaa |
214 |
Q |
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| T |
49392271 |
agaacgagtgttcgttgagagggtggtggtcgttgttgcgatggcggttgtaacgaggacggtgggggaaagaaaacacacgcagtaaagaaaggaggaa |
49392172 |
T |
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| Q |
215 |
gagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaattaccc |
288 |
Q |
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| T |
49392171 |
gagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaattaccc |
49392098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 51312174 - 51312066
Alignment:
| Q |
180 |
gggaaagaaaatacacgcagtaaagaaaggaggaagagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatcc |
279 |
Q |
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| T |
51312174 |
gggaaagaaaacacacagagaagagagaggaagaagagagaagaaaaagatggttgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatcc |
51312075 |
T |
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| Q |
280 |
aaattaccc |
288 |
Q |
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| T |
51312074 |
aaattaccc |
51312066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 31726607 - 31726345
Alignment:
| Q |
23 |
acgagactgagatacgacgagggagaaacagacacaagagttgatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaagagaacgag |
122 |
Q |
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| T |
31726607 |
acgagactgagatacgacgagggagaaacagacacaagagttgatggtggcgacgagaacaatttaacgatgacgaagtcggagggtagaggagaacgag |
31726508 |
T |
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| Q |
123 |
tgtccattgaaagggtggtggtcgctgttgcgatggcggttgtaacgaggatggtgggggaaagaaaatacacgcagtaaagaaaggaggaagagacagg |
222 |
Q |
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| T |
31726507 |
cgtccgccgagagggtggtggtcgctgttgcgatggcggttataacgaggacggtgagggaaagaaaacaaacacagaaaagaaaggaggaagagacagg |
31726408 |
T |
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| Q |
223 |
aagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaatta |
285 |
Q |
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| T |
31726407 |
aagaagaggattgtggtgcatttacaacactgcccctgctttaagggtgaaatatccaaatta |
31726345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 22278882 - 22278805
Alignment:
| Q |
23 |
acgagactgagatacgacgagggagaaacagacacaagagttgatggtggtgacgggaagagtgtaacgatgacgaag |
100 |
Q |
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| T |
22278882 |
acgagactgagatacgacaacgaagaaacagacacaagagttgatggtggcgacgggaagagtttggcgatgacgaag |
22278805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 22278715 - 22278647
Alignment:
| Q |
220 |
aggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaattaccc |
288 |
Q |
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| T |
22278715 |
aggaagaagagggttgtggtgtatttacaaaactgtccatgctttaagagtgaaatatccaaattaccc |
22278647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 22278793 - 22278748
Alignment:
| Q |
136 |
ggtggtggtcgctgttgcgatggcggttgtaacgaggatggtggggga |
183 |
Q |
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| T |
22278793 |
ggtggtggtcgctgttg--atagcggttgtaacgaggacggtggggga |
22278748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 47531832 - 47531754
Alignment:
| Q |
207 |
aggaggaagagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaatta |
285 |
Q |
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| T |
47531832 |
aggaagaagagagaagaagaagaggattgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatccaaatta |
47531754 |
T |
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