View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9400_high_5 (Length: 280)
Name: NF9400_high_5
Description: NF9400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9400_high_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 14766800 - 14767057
Alignment:
| Q |
1 |
gaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggtt |
100 |
Q |
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| T |
14766800 |
gaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggtt |
14766899 |
T |
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| Q |
101 |
ttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtat |
200 |
Q |
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| T |
14766900 |
ttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtat |
14766999 |
T |
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| Q |
201 |
aaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacacca |
258 |
Q |
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| T |
14767000 |
aaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacacca |
14767057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 14873019 - 14873248
Alignment:
| Q |
13 |
tatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaa |
112 |
Q |
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| T |
14873019 |
tatatatagtctcacacatatcatagcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccaccca |
14873118 |
T |
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| Q |
113 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
212 |
Q |
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| T |
14873119 |
tagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttc |
14873218 |
T |
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| Q |
213 |
ctctcctttagcatttttgaaaggtatata |
242 |
Q |
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| T |
14873219 |
tattcctttagcatttttaaatggtatata |
14873248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 14786016 - 14786140
Alignment:
| Q |
134 |
tcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaa |
233 |
Q |
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| T |
14786016 |
tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaa |
14786115 |
T |
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| Q |
234 |
aggtatataaaagctagcaacacca |
258 |
Q |
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| T |
14786116 |
aggtatatgaaagctagcaagacca |
14786140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 14877850 - 14877965
Alignment:
| Q |
113 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
212 |
Q |
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||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||| ||| ||||||||||||||||| |
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| T |
14877850 |
tagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaaccttt |
14877949 |
T |
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| Q |
213 |
ctctcctttagcattt |
228 |
Q |
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| T |
14877950 |
ctctcctttatcattt |
14877965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 14759852 - 14759762
Alignment:
| Q |
151 |
aactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatat |
241 |
Q |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatat |
14759762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 14872226 - 14872310
Alignment:
| Q |
65 |
ttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatc |
149 |
Q |
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| T |
14872226 |
ttaaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcacattatc |
14872310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 83863 - 84041
Alignment:
| Q |
66 |
taaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaac |
165 |
Q |
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||||| |||||| |||||| |||||| | || |||| | |||| |||||||| ||| |||||||||||||| || |||| ||||||||||| ||| |
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| T |
83863 |
taaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaac |
83962 |
T |
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| Q |
166 |
ttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaa |
244 |
Q |
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| T |
83963 |
ctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaa |
84041 |
T |
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