View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9400_low_3 (Length: 349)
Name: NF9400_low_3
Description: NF9400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9400_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 42387318 - 42387553
Alignment:
| Q |
7 |
agacaaagaatcgcagagaaatgtgagtgaaaacgctatcaacaaaaatggaattcaacagtaaagagagagaatattctcttttgtaagatttattgat |
106 |
Q |
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| T |
42387318 |
agacaaagaatcgcagaaaaatgtgagggaaaacgctatcaacaaaaatggaattcaacagtaaagagaga-------------------atttattgat |
42387398 |
T |
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| Q |
107 |
taatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtagaa |
206 |
Q |
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| T |
42387399 |
taatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtagaa |
42387498 |
T |
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| Q |
207 |
tatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
261 |
Q |
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| T |
42387499 |
tatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
42387553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 106 - 261
Target Start/End: Complemental strand, 3190758 - 3190603
Alignment:
| Q |
106 |
ttaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga |
205 |
Q |
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| T |
3190758 |
ttaatctgcagacctatcccaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga |
3190659 |
T |
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| Q |
206 |
atatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
261 |
Q |
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| T |
3190658 |
gtatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
3190603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 2317103 - 2317036
Alignment:
| Q |
41 |
gctatcaacaaaaatggaattcaacagtaaagagagagaatattc-tcttttgtaagatttattgatt |
107 |
Q |
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| T |
2317103 |
gctatcatcaaaaatggaattcaaccgtaaagagagagactattcttctcttgtaagagttattgatt |
2317036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 39076745 - 39076690
Alignment:
| Q |
40 |
cgctatcaacaaaaatggaattcaacagtaaagagagagaatattctcttttgtaa |
95 |
Q |
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| T |
39076745 |
cgctatcaccaaaaatgaaattcaacagtaaagagagagactattctctcttgtaa |
39076690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 1752801 - 1752838
Alignment:
| Q |
71 |
agagagagaatattctcttttgtaagatttattgatta |
108 |
Q |
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| T |
1752801 |
agagagagactattctcttttgtaagatttattgatta |
1752838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 43414261 - 43414221
Alignment:
| Q |
63 |
aacagtaaagagagagaatattctcttttgtaagatttatt |
103 |
Q |
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| T |
43414261 |
aacagtaaagagagagactattttcttttgtaagagttatt |
43414221 |
T |
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