View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9400_low_4 (Length: 335)
Name: NF9400_low_4
Description: NF9400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9400_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 42743880 - 42743562
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743880 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
42743781 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42743780 |
atgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatag |
42743681 |
T |
|
| Q |
202 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42743680 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
42743581 |
T |
|
| Q |
302 |
gaaccttggacgctcacag |
320 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42743580 |
gaaccttggacgctcacag |
42743562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 42753239 - 42752921
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753239 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
42753140 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42753139 |
atgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttcacaatag |
42753040 |
T |
|
| Q |
202 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42753039 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
42752940 |
T |
|
| Q |
302 |
gaaccttggacgctcacag |
320 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42752939 |
gaaccttggacgctcacag |
42752921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 42717252 - 42716951
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||| | | |
|
|
| T |
42717252 |
aatgcaagtgtatttggctatggcaatggaacagcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttggga---ttcatgttatg |
42717156 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||| |||| |
|
|
| T |
42717155 |
atgcagatattttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaattttacgatag |
42717056 |
T |
|
| Q |
202 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||| | ||| || |
|
|
| T |
42717055 |
cagtatttccatagggtctttccatgcagttgccaataacataattgttgtggctgctggaggaaattcaggacctgctcctagtactgtatccaacttg |
42716956 |
T |
|
| Q |
302 |
gaacc |
306 |
Q |
| |
|
||||| |
|
|
| T |
42716955 |
gaacc |
42716951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 42734633 - 42734948
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| | | | ||| | | |
|
|
| T |
42734633 |
aatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgccaaaagcacgagtttccgcctataaggtttgttggg--gttcg-tgttatg |
42734729 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| || | || |||||||||||||| || |||| |
|
|
| T |
42734730 |
atgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttcacgatag |
42734829 |
T |
|
| Q |
202 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
42734830 |
cagtatttccatagggtctttccatgcagttgccaacaacataattgttgtggcttctggaggtaattcaggaccttcttctaacactgtagcaaacatg |
42734929 |
T |
|
| Q |
302 |
gaaccttggacgctcacag |
320 |
Q |
| |
|
||||| |||| ||||||| |
|
|
| T |
42734930 |
gaaccgtggatcctcacag |
42734948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 42762861 - 42762543
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
|
|
| T |
42762861 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg---gatggatgttatg |
42762765 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggta---gaaatattcctgttgaattttacaa |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| | | | | |||| || | | |
|
|
| T |
42762764 |
atgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggtagtggtggtttagcccaagaatattccca |
42762665 |
T |
|
| Q |
199 |
tagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaac |
298 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||| | ||| |
|
|
| T |
42762664 |
aaacagtatttccataggatcttttcatgcagttgccaacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagtactgtatccaac |
42762565 |
T |
|
| Q |
299 |
ctggaaccttggacgctcacag |
320 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42762564 |
ttggaaccttggacgctcacag |
42762543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42769751 - 42769667
Alignment:
| Q |
1 |
aaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg |
85 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42769751 |
aaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg |
42769667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 42769633 - 42769506
Alignment:
| Q |
104 |
gcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagca |
203 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||||||||| || ||| |||| | |||| ||||| | | ||| || |||||||| | |||| |
|
|
| T |
42769633 |
gcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtgg---tgatcccgtagaattttatgaaagca |
42769537 |
T |
|
| Q |
204 |
gtatttccatagggtctttccatgcagttgc |
234 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |
|
|
| T |
42769536 |
gtattgctatagggtctttccatgcagttgc |
42769506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 23040594 - 23040904
Alignment:
| Q |
2 |
aatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaag |
101 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| | |
|
|
| T |
23040594 |
aatgcgagtgtatttggcaatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggtttgctggggggatttatgtcatg |
23040693 |
T |
|
| Q |
102 |
atgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23040694 |
atgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagtgtctttgggtagaaattttcctgttgaatttcacaatag |
23040793 |
T |
|
| Q |
202 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagcaaacctg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||| | ||| || |
|
|
| T |
23040794 |
cagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtgtctggtggaggaaattcaggacctgatcctagtactgtatccaacttg |
23040893 |
T |
|
| Q |
302 |
gaaccttggac |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
23040894 |
gaaccttggac |
23040904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 42313818 - 42313973
Alignment:
| Q |
7 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
106 |
Q |
| |
|
|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
|
|
| T |
42313818 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
42313917 |
T |
|
| Q |
107 |
gatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagt |
162 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
42313918 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
42313973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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