View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_high_13 (Length: 470)
Name: NF9401_high_13
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 45792654 - 45793114
Alignment:
| Q |
1 |
ctaattgttttgtttgtctctgcatgctgcaactttatttctttctaaagggatttgagcatataaatttagcttttttcttggtttctaagaaaagtta |
100 |
Q |
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| T |
45792654 |
ctaattgttttgtttgtctctgcatgctgcaactttatttctttctaaagggatttgagcatataaatttagcttttttcttggtttctaagaaaagtta |
45792753 |
T |
|
| Q |
101 |
tatcctggttgacaggttgttaataccctgccttctcattcaaattccattgagtcagttgcattcgcaccaaggtatgttttaagagtggcaaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45792754 |
tatcctggttgacaggttgttaataccctgccttctcattcaaattccgttgagtcagttgcattcgcaccaaggtatgttttaagagtggcaaattgtt |
45792853 |
T |
|
| Q |
201 |
cataacctgtttatatgttcattcgtgcacattttcatgtatccttttggttcatgcatgtgtatggtggaaggtttatttgattcaaaggttgtctgaa |
300 |
Q |
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| T |
45792854 |
cataacctgtttatatgttcattcgtgcacattttcatgtatccttttggttcatgcatgtgtatggtggaagttttatttgattcaaaggttgtctgaa |
45792953 |
T |
|
| Q |
301 |
gaacagtaacatactgaagagagaaaaatagtcttggcacttggcagtgacaagcaacataaaatcagggtctgttgataaaaatgaaacatgaccagct |
400 |
Q |
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| T |
45792954 |
gaacagtaacatactgaagagaaaaaaatagtcttggcacttggcagtgacaagcaacataaaatcagggtctgttgataaaaatgaaacatgaccagct |
45793053 |
T |
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| Q |
401 |
cacttgatttatggtataacacaaatattaaaagtagttccatgtattttcaaagaataat |
461 |
Q |
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| T |
45793054 |
cacttgatttatggtataacacaaatattaaaagtagttccatgtattttcaaagaataat |
45793114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 43818201 - 43817977
Alignment:
| Q |
13 |
tttgtctctgcatgctgcaactttatttctttctaaagggatttgagcatataaatttagcttttttcttggtttctaagaaaagttatatcctggttga |
112 |
Q |
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||||||| |||||||||||||||||||| | | ||| || ||||||||||||||||||||||| | |||||||||||||||| ||| |||| || ||| |
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| T |
43818201 |
tttgtctttgcatgctgcaactttatttatgt--aaaagggtttgagcatataaatttagctttctgcttggtttctaagaaatgttgtatcttg-ttgg |
43818105 |
T |
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| Q |
113 |
caggttgttaataccctgccttctcattcaaattccattgagtcagttgcattcgcaccaaggtatgttttaagagtggcaaattattcataacctgttt |
212 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||||||||||| | |
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| T |
43818104 |
caggttgttagtaccctgccttctcattcaagttccattgagtgtgttggattcgcaccaaggtatgttttaagactagcaaactattcataacctgtgt |
43818005 |
T |
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| Q |
213 |
atatgttcattcgtgcacattttcatgt |
240 |
Q |
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||||| ||||||| ||| ||||||||| |
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| T |
43818004 |
gtatgtgcattcgtacactttttcatgt |
43817977 |
T |
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