View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_high_16 (Length: 452)
Name: NF9401_high_16
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_16 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 251 - 433
Target Start/End: Original strand, 33537021 - 33537203
Alignment:
| Q |
251 |
catctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacatttttaactgcactgtaagttcactttattgaagga |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537021 |
catctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctccttctacatttttaactgcactgtaagttcactttattgaagga |
33537120 |
T |
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| Q |
351 |
taacatggtaataaaatttgaaatgggagaaccctgagttttttaccacactgtgacatttctaacctcttcattacactatt |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537121 |
taacatggtaataaaatttgaaatgggagaaccctgagttttttaccacactgtgacatttctaacctcttcattacactatt |
33537203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 252 - 433
Target Start/End: Original strand, 33536745 - 33536926
Alignment:
| Q |
252 |
atctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacatttttaactgcactgtaagttcactttattgaaggat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536745 |
atctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctccttctacatttttaactgcactgtaagttcactttattgaaggat |
33536844 |
T |
|
| Q |
352 |
aacatggtaataaaatttgaaatgggagaaccctgagttttttaccacactgtgacatttctaacctcttcattacactatt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33536845 |
aacatggtaataaaatttgaaatgggagaaccctgagttttttaccacactgtgacatttctaacctcttcattacactatt |
33536926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 253 - 433
Target Start/End: Original strand, 125528 - 125709
Alignment:
| Q |
253 |
tctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacatttttaactgcactgtaagttcactttattgaaggata |
352 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125528 |
tctattatatatatgagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacatttttaactgcactgtaagttcactttattgaaggata |
125627 |
T |
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| Q |
353 |
acatggtaataaaatttgaaatgggagaaccctgag-ttttttaccacactgtgacatttctaacctcttcattacactatt |
433 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
125628 |
acatggtaataaaatttgaaatggaagaaccctgagtttttttaccacactgtgacatttctaaccttttcattacactatt |
125709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 252 - 402
Target Start/End: Complemental strand, 23973546 - 23973395
Alignment:
| Q |
252 |
atctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacattttt-aactgcactgtaagttcactttattgaagga |
350 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||||| |
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| T |
23973546 |
atctattatatatatgagaaaacaaatgcctgtcaaaattgcacaactgtccctgcttctaccttttttaactacactttaatttcactttattgaaggg |
23973447 |
T |
|
| Q |
351 |
taacatggtaataaaatttgaaatgggagaaccctgagttttttaccacact |
402 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23973446 |
taatgtggtaataaaatttgaaatgggagaaccctgagttttttaccgcact |
23973395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 428
Target Start/End: Original strand, 16207883 - 16208058
Alignment:
| Q |
253 |
tctattatctatataagaaaacaaatgcctatcaaaaatgcacaactgtccctgcttctacatttttaactgcactgtaagttcactttattgaaggata |
352 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||| | ||||||||||| ||| ||| ||||||||||||||| || |||||||||||||||| || |
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| T |
16207883 |
tctattatatatacgagaaaacaaatgcctaccaaaatttcacaactgtccatgccactaaatttttaactgcactctattttcactttattgaagggta |
16207982 |
T |
|
| Q |
353 |
acatggtaataaaatttgaaatgggagaaccctgagttttttaccacactgtgacatttctaacctcttcattaca |
428 |
Q |
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| ||||||| ||| ||| |||||||||| |||||||||||||||||||| |||| |||||| |||||| |||||| |
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| T |
16207983 |
agatggtaacaaattttcaaatgggagactcctgagttttttaccacactctgacttttctaccctctttattaca |
16208058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 11606417 - 11606496
Alignment:
| Q |
22 |
gagcaaatgaagagtgaccggagacggctgagggttagagaagaaagaagcatgagagagaataacaatgttgtctattt |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11606417 |
gagcaaatgaagagtgatcggagacggctgagggttagagaagaaagaagcatgagagagaataacaatgttgtctattt |
11606496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 11606567 - 11606618
Alignment:
| Q |
201 |
caagtggagggtgtaaaagagagggatggcacatgaggttgttcacgtatca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11606567 |
caagtggagggtgtaaaagagagggatggcacatgaggttgttcacgtatca |
11606618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 19411 - 19374
Alignment:
| Q |
252 |
atctattatctatataagaaaacaaatgcctatcaaaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |
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| T |
19411 |
atctattatctatataagaaaacaaatgtctaccaaaa |
19374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 36526005 - 36525969
Alignment:
| Q |
253 |
tctattatctatataagaaaacaaatgcctatcaaaa |
289 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
36526005 |
tctattatctatatgagaaaacaaatgcctaccaaaa |
36525969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 36526266 - 36526230
Alignment:
| Q |
253 |
tctattatctatataagaaaacaaatgcctatcaaaa |
289 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |
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|
| T |
36526266 |
tctattatctatatgagaaaacaaatgcctaccaaaa |
36526230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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