View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_high_24 (Length: 368)
Name: NF9401_high_24
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 38126199 - 38126543
Alignment:
| Q |
1 |
tattgtttgtattcattgcttgtaatgcttgttactattagacataaaatccttttaacttatttatggttgattttatatatcactatgtatgttgaca |
100 |
Q |
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| T |
38126199 |
tattgtctgtattcattgcttgtaatgcttattactattagacataaaatccttttaatttatttatggttgattttat----cactatgtatgttgaca |
38126294 |
T |
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| Q |
101 |
gcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcataggtc |
200 |
Q |
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| T |
38126295 |
gcttcaagaaagcagtgtaaagtgcagtctggttcaatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcataggtc |
38126394 |
T |
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| Q |
201 |
tctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacatatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126395 |
tctatgtagatatagatcaggaaaactgacatatatgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacatatg |
38126494 |
T |
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| Q |
301 |
ttgcttattttgcaagttttctactgtatacatggtcctcagatcaaac |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38126495 |
ttgcttattttgcaagttttctactgtatacatggtccttagatcaaac |
38126543 |
T |
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