View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_high_28 (Length: 357)
Name: NF9401_high_28
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 341
Target Start/End: Complemental strand, 11838665 - 11838329
Alignment:
| Q |
5 |
agtatggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctat |
104 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| || | |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
11838665 |
agtatggaggtggactagctgagtttgccgtggctagtgagagcttaacagctaccagaccacctgaagtctcagctgctgaagctgcgggtttacctat |
11838566 |
T |
|
| Q |
105 |
agccggtctcacagctcatggtgccttatctaaaatcggaggaattaagcttgatgggactggcaagcagaagaatattttggtaactgctgcttcaggt |
204 |
Q |
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|||||| | ||||||| || |||| | | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
11838565 |
tgccggtttaacagctcgtgatgccctcacagaaatcggaggaattaagcttgatgggactggcgagcagaagaatgttttggtaactgctgcttcaggt |
11838466 |
T |
|
| Q |
205 |
ggtgtaggtatgtatgctgttcaacttgccaaactagggaacaaccatgtcactgctacctgtggtgctcgcaacatcgactttgttaagagcttaggcg |
304 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11838465 |
ggtgtaggttcatttgctgttcaacttgccaaactagggaacaaccacgtgacagccacttgtggtgctcgcaacattgacttcgttaagagcttaggcg |
11838366 |
T |
|
| Q |
305 |
ctgacgaggttcttgactacaaaactccagagggaac |
341 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
11838365 |
ctgacgaggttcttgactacaaaactccggagggaac |
11838329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 11807393 - 11807059
Alignment:
| Q |
5 |
agtatggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctat |
104 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| | |||||||| ||||||||||| |||||| ||| ||||||||||| | ||||||||||| |
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| T |
11807393 |
agtatggaggtggactatctgagtttgcggtggctagcgagagcttaacagttgccagaccatctgaagtctcaactgctgaagcttccggtttacctat |
11807294 |
T |
|
| Q |
105 |
agccggtctcacagctcatggtgccttatctaaaatcggaggaattaagcttgatgggactggcaagcagaagaatattttggtaactgctgcttcaggt |
204 |
Q |
| |
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||| ||||||||||||| | |||| | | |||| |||||| ||||||||||||||||||| ||| |||||| |||||| ||| ||||||||||| |
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| T |
11807293 |
agctggtctcacagctcgtaatgcccttaccgaaattggaggagctaagcttgatgggactggcgagccgaagaacgctttggttacttctgcttcaggt |
11807194 |
T |
|
| Q |
205 |
ggtgtaggtatgtatgctgttcaacttgccaaactagggaacaaccatgtcactgctacctgtggtgctcgcaacatcgactttgttaagagcttaggcg |
304 |
Q |
| |
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||||||||| | | |||||||||||||||||||||||||||||||||||| || || || ||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
11807193 |
ggtgtaggtgtatttgctgttcaacttgccaaactagggaacaaccatgtgaccgccacttgtggcgctcgcaacatcgactttgttaagggcttaggcg |
11807094 |
T |
|
| Q |
305 |
ctgacgaggttcttgactacaaaactccagaggga |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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|
| T |
11807093 |
ctgacgaggttcttgactacaagactccagaggga |
11807059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 11430985 - 11430654
Alignment:
| Q |
8 |
atggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctatagc |
107 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| | ||||||| || ||||||| |||||| ||||||||||||| ||| ||||||||| |||| |
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|
| T |
11430985 |
atgggggtggactagctgagtttgcggtggctagcgagagcttaacaactttgagaccatctgaagtctcagctgctgaaggtgccggtttacctgtagc |
11430886 |
T |
|
| Q |
108 |
cggtctcacagctcatggtgccttatctaaaatcggaggaattaagcttgatgggactggcaagcagaagaatattttggtaactgctgcttcaggtggt |
207 |
Q |
| |
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||||||| | ||||||| |||| | | ||||| | ||||||||| |||||| | ||||| | | || || ||| ||||||| |||||||||||||| |
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|
| T |
11430885 |
cggtctcgcggctcatgatgccatcacaaaaatggcaggaattaaacttgatcgtactggtgaacccaaaaacattctggtaaccgctgcttcaggtggc |
11430786 |
T |
|
| Q |
208 |
gtaggtatgtatgctgttcaacttgccaaactagggaacaaccatgtcactgctacctgtggtgctcgcaacatcgactttgttaagagcttaggcgctg |
307 |
Q |
| |
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|||||| | ||||| |||||||||||||||||||| |||||||||||||| || || ||||||||| | || || || || | |||||||||||||| | |
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| T |
11430785 |
gtaggtgtatatgcagttcaacttgccaaactaggaaacaaccatgtcacagccacttgtggtgctagaaatattgagcttatcaagagcttaggcgccg |
11430686 |
T |
|
| Q |
308 |
acgaggttcttgactacaaaactccagaggga |
339 |
Q |
| |
|
| |||||||| |||||||| |||||||||||| |
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|
| T |
11430685 |
atgaggttctcgactacaagactccagaggga |
11430654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 11564481 - 11564812
Alignment:
| Q |
8 |
atggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctatagc |
107 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| | ||||||| || ||||||| |||||| ||||||||||||| ||| ||||||||| |||| |
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|
| T |
11564481 |
atgggggtggactagctgagtttgcggtggctagcgagagcttaacaactttgagaccatctgaagtctcagctgctgaaggtgccggtttacctgtagc |
11564580 |
T |
|
| Q |
108 |
cggtctcacagctcatggtgccttatctaaaatcggaggaattaagcttgatgggactggcaagcagaagaatattttggtaactgctgcttcaggtggt |
207 |
Q |
| |
|
||||||| | ||||||| |||| | | ||||| | ||||||||| |||||| | ||||| | | || || ||| ||||||| |||||||||||||| |
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|
| T |
11564581 |
cggtctcgcggctcatgatgccatcacaaaaatggcaggaattaaacttgatcgtactggtgaacccaaaaacattctggtaaccgctgcttcaggtggc |
11564680 |
T |
|
| Q |
208 |
gtaggtatgtatgctgttcaacttgccaaactagggaacaaccatgtcactgctacctgtggtgctcgcaacatcgactttgttaagagcttaggcgctg |
307 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||| |||||||||||||| || || ||||||||| | || || || || | |||||||||||||| | |
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|
| T |
11564681 |
gtaggtgtatatgcagttcaacttgccaaactaggaaacaaccatgtcacagccacttgtggtgctagaaatattgagcttatcaagagcttaggcgccg |
11564780 |
T |
|
| Q |
308 |
acgaggttcttgactacaaaactccagaggga |
339 |
Q |
| |
|
| |||||||| |||||||| |||||||||||| |
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|
| T |
11564781 |
atgaggttctcgactacaagactccagaggga |
11564812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 11855937 - 11855607
Alignment:
| Q |
5 |
agtatggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctat |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| | || | || ||||||||||||||||| |||||| || || |||||||| ||| |||||||| | |
|
|
| T |
11855937 |
agtatgcaggtggactagctgagtttgcggtggttgctgagagctcaacagctgccagaccatctgaagtctccgcagctgaagcagcgagtttacctgt |
11855838 |
T |
|
| Q |
105 |
agccggtctcacagctcatggtgccttatctaaaatcggaggaattaagcttgatgggactggcaagcagaagaatattttggtaactgctgcttcaggt |
204 |
Q |
| |
|
|||||||| ||||||| || || | | || | || ||| ||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||| |
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|
| T |
11855837 |
agccggtcaaacagctcgtgatgtgctcacccaagttgggggagttaagtttgatgggactggtgagcccaagaacattttggtaactgctgcttcaggt |
11855738 |
T |
|
| Q |
205 |
ggtgtaggtatgtatgctgttcaacttgccaaactagggaacaaccatgtcactgctacctgtggtgctcgcaacatcgactttgttaagagcttaggcg |
304 |
Q |
| |
|
||||||||| | | || |||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||| || | ||||||||||| | |
|
|
| T |
11855737 |
ggtgtaggtgtatttgttgttcaacttgcaaaactagggaacaaccatgtgacagctacttgtggtgctcgcaacattgaccttatcaagagcttaggtg |
11855638 |
T |
|
| Q |
305 |
ctgacgaggttcttgactacaaaactccaga |
335 |
Q |
| |
|
| || |||||||| |||||||| |||||||| |
|
|
| T |
11855637 |
ccgatgaggttctcgactacaagactccaga |
11855607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 11801933 - 11801817
Alignment:
| Q |
5 |
agtatggaggtggactagctgagtttgcagtggctagcgaaaacttaacagctgccagaccatttgaagtatcagctgctgaagctgcgggtttacctat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || | |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
11801933 |
agtatggaggtggactagctgagtttgcggtggctagagagagcttaacagctgcaagaccatctgaagtatcagctgctgaagctgcaggtttacctat |
11801834 |
T |
|
| Q |
105 |
agccggtctcacagctc |
121 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11801833 |
agccggtctcacagctc |
11801817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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