View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_high_33 (Length: 314)
Name: NF9401_high_33
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 53627179 - 53626901
Alignment:
| Q |
27 |
ttttatgtttcatagatcaaataggaaaaataacggtatattaatcccttcaacaacnnnnnnnn-ccgggtatatttactnnnnnnntctaagccacgt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
53627179 |
ttttatgtttcatagatcaaataggaaaaataacggtatattaatcccttcaacaacaaaaaaaaacccggtatatttactaaaaaaatctaagccacgt |
53627080 |
T |
|
| Q |
126 |
aggaggataacatccaatccaaccaatcacaacaatattcatgagataacccactttaagcccacgcagtctgtggcacatctacattatctaaatcaca |
225 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53627079 |
agaaggataacatccaatccaaccaatcacaacaatattcatgagataacccactttaagcccacgcagtctgtggcacatctacattatctaaatcaca |
53626980 |
T |
|
| Q |
226 |
cattcttccacacatctgagccacacaaaaaccaatccacatctttatcatcatccattctataaaaaatcatcctttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53626979 |
cattcttccacacatctgagccacacaaaaaccaatccacatctttatcatcatccattctataaaaaatcatcctttg |
53626901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University