View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_high_54 (Length: 225)
Name: NF9401_high_54
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_high_54 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 44899141 - 44898920
Alignment:
| Q |
4 |
attaaaacaatcattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagctcgt |
103 |
Q |
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| T |
44899141 |
attaaaacaaccattataatccctgttactccttcccatgatttcacaaaatgccaataacttgttgcttgctttccaaaaaatggttccatgagctcgt |
44899042 |
T |
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| Q |
104 |
acttttcactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctg |
203 |
Q |
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| T |
44899041 |
acttttcactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctg |
44898942 |
T |
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| Q |
204 |
caaaatacaggatttaatagtt |
225 |
Q |
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|||||||||||||||||||||| |
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| T |
44898941 |
caaaatacaggatttaatagtt |
44898920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 44885757 - 44885549
Alignment:
| Q |
4 |
attaaaacaatcattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagctcgt |
103 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44885757 |
attaaaacaaccattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgt |
44885658 |
T |
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| Q |
104 |
acttttcactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctg |
203 |
Q |
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| T |
44885657 |
acttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctg |
44885558 |
T |
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| Q |
204 |
caaaataca |
212 |
Q |
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|||| |||| |
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| T |
44885557 |
caaattaca |
44885549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 44915396 - 44915206
Alignment:
| Q |
4 |
attaaaacaatcattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagctcgt |
103 |
Q |
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|||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
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| T |
44915396 |
attaaaacaaccattacaatccccgttactccttcccatgatttcacaaaatgccaataacttgttggttgctttccaaaaaatggttccatgagcttgt |
44915297 |
T |
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| Q |
104 |
acttttcactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagc |
194 |
Q |
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| T |
44915296 |
acttttcactatttgcatgaagaaggcgaggaaagtcgcaagtaagatgataaatagcatgtataccaactccagttgctactgccacagc |
44915206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 39983032 - 39982834
Alignment:
| Q |
10 |
acaatcattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagctcgtactttt |
109 |
Q |
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|||| ||||| ||| |||||||| |||||||| ||||| ||||||||||| |||||||||| || || ||| ||||| || || || |||| |||||||| |
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| T |
39983032 |
acaaccattagaattcctgttaccccttcccaagatttgacaaaatgccagtaatttgttggtttctctccgaaaaaaggctcaatcagcttgtactttt |
39982933 |
T |
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| Q |
110 |
cactattcgcgtgaataagactaggaaagtcacaagcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctgcaaaa |
208 |
Q |
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| T |
39982932 |
cattgcttgcatgaagaatgcgaggaaaatcacaagcaagatgataaatagcatgtataccaacaccaattgctattgccagagctatcatctgcaaaa |
39982834 |
T |
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