View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_100 (Length: 246)
Name: NF9401_low_100
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_100 |
 | |
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| [»] chr6 (2 HSPs) |
| |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
| |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 27876563 - 27876792
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876563 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
27876662 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
27876663 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
27876762 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27876763 |
agagttctattcatccgctctgccacacca |
27876792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 8481612 - 8481775
Alignment:
| Q |
76 |
ttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttg |
175 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| || ||| |||| || ||||| || |||||||| || ||||| | |||| |||| | || || || | |
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|
| T |
8481612 |
ttccaaatctccatcggtgttttcaaaccaattgcagtttatggagatcgattgatcacataacatgccattttcgcagcttttgccaaaaaagacttgg |
8481711 |
T |
|
| Q |
176 |
ccattcccgctgttttccgcatacctcttgttcttcctacgagagttctattcatccgctctgc |
239 |
Q |
| |
|
||||||| |||||| || ||||| |||||||| | ||| ||||||| |||||| |||||||| |
|
|
| T |
8481712 |
ccattcctgctgttctctgcataactcttgttttatctaggagagttttattcaatcgctctgc |
8481775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 48699675 - 48699904
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699675 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
48699774 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
48699775 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
48699874 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48699875 |
agagttctattcatccgctctgccacacca |
48699904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 42268366 - 42268137
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268366 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
42268267 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
42268266 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
42268167 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42268166 |
agagttctattcatccgctctgccacacca |
42268137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 30948037 - 30948266
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30948037 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgtcgttga |
30948136 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||| ||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
30948137 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccatttccgctgttttcagcatagctcttgttctttctagg |
30948236 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30948237 |
agagttctattcatccgctctgccacacca |
30948266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 2001305 - 2001111
Alignment:
| Q |
52 |
gaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcc |
151 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| || || ||| |||| |||||| |
|
|
| T |
2001305 |
gaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatggagatcgattgatcacgtaataggcagttttca |
2001206 |
T |
|
| Q |
152 |
ccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacgagagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
| |||||||||||||| || || |||| ||| | |||| || ||| |||||||||| || ||||||| |||||||||||||||| |||||| |
|
|
| T |
2001205 |
cagcttctgcccagaaagacttagccactcctgttgttctcaacatggctcttgttctatataggagagttatattcatccgctctgctacacca |
2001111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5821129 - 5821358
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821129 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
5821228 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
5821229 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
5821328 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5821329 |
agagttctattcatccgctctgccacacca |
5821358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 2815117 - 2815346
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
2815117 |
acatcacatacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccataggagtcttcaaatcaatcaacgttga |
2815216 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
2815217 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
2815316 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
2815317 |
agagttatattcatccgctctgccacacca |
2815346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 42587408 - 42587185
Alignment:
| Q |
23 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
122 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| | |||| |||| || |||||||| || |
|
|
| T |
42587408 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgtttacaaaccaattgcggttgatggaga |
42587309 |
T |
|
| Q |
123 |
gcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacgagagtt |
222 |
Q |
| |
|
||||| || || ||||||||||||||| | |||||||||||||| || || |||| | | |||||| || ||| |||||||| | ||| ||||||| |
|
|
| T |
42587308 |
tcgattgatcacgtaacaggcggttttcacagcttctgcccagaaagacttagccactactgctgttctcaacatggctcttgttttatctaagagagtt |
42587209 |
T |
|
| Q |
223 |
ctattcatccgctctgccacacca |
246 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
42587208 |
ctattcatccgctctgctacacca |
42587185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 827942 - 827713
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827942 |
acatcacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
827843 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| |||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
827842 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcacagaacgacttggccattcccgctgttttcagcataactcttgttctttctagg |
827743 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
827742 |
agagttctattcatccgctctgccacacca |
827713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 9441946 - 9442175
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9441946 |
acatcacatacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcaccgttga |
9442045 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
9442046 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
9442145 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9442146 |
agagttctattcatccgctctgccacacca |
9442175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 24596348 - 24596571
Alignment:
| Q |
23 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
122 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || ||||||| || |
|
|
| T |
24596348 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatgtaga |
24596447 |
T |
|
| Q |
123 |
gcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacgagagtt |
222 |
Q |
| |
|
||||| || || ||| ||||||||||| | |||||||||||||| || || |||| | |||||| || ||| ||||| || | || ||||||| |
|
|
| T |
24596448 |
tcgattgatcacgtaataggcggttttcacagcttctgcccagaaagacttagccactattgctgttctcaacatggctctttttttatttaagagagtt |
24596547 |
T |
|
| Q |
223 |
ctattcatccgctctgccacacca |
246 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
24596548 |
ctattcatccgctctgctacacca |
24596571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 41720873 - 41720644
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41720873 |
acatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgccgttga |
41720774 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
41720773 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctagg |
41720674 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41720673 |
agagttctattcatccgctctgccacacca |
41720644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 34354473 - 34354244
Alignment:
| Q |
17 |
acatcacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
34354473 |
acatcacgtacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaattgtcgttga |
34354374 |
T |
|
| Q |
117 |
tggtgagcgatttattacataacaggcggttttccccgcttctgcccagaacgattttgccattcccgctgttttccgcatacctcttgttcttcctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| ||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
34354373 |
tggtgagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcctgctgttttcagcatagctcttgttctttctagg |
34354274 |
T |
|
| Q |
217 |
agagttctattcatccgctctgccacacca |
246 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
34354273 |
agagttctattcatccgctctgccgcacca |
34354244 |
T |
|
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