View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_114 (Length: 241)
Name: NF9401_low_114
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_114 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: scaffold0314 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 17557 - 17764
Alignment:
| Q |
14 |
cacagaccaaacatacaccaaaaatcaattttagaatcaaaatcttcaaatttgtttcaagtcaaaacaaaacnnnnnnnnnnnnnnnngttacttggag |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17557 |
cacaaaccaaacatacaccaaaaatcaattttagaatcaaaatcttcaaatttgtttcaagtcaaaacaaaacagagagagagagag--gttacttggag |
17654 |
T |
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| Q |
114 |
gtgagagaagggaattgaaacggtggagtaagaagacatagtatggcggggaacgactgcgttttgaggaacaaggggcgggaatggagacgagttccac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17655 |
gtgagagaagggaattgaaacggtggagtaagaagacatagtatggcggggaacgactgcgttttgaggaacaaggggcgggaatggagacgagttcaac |
17754 |
T |
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| Q |
214 |
atgcgaatgg |
223 |
Q |
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|||||||||| |
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| T |
17755 |
atgcgaatgg |
17764 |
T |
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