View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_115 (Length: 241)
Name: NF9401_low_115
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 17444651 - 17444715
Alignment:
| Q |
5 |
atctgttttatttaatagcaaaatataatataagaaaataaacggcatcaacccaaattagggct |
69 |
Q |
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| T |
17444651 |
atctgttttatttaatagcaaaatataatataagaaaataaacggcaccaagccaaattagggct |
17444715 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 17445822 - 17445875
Alignment:
| Q |
171 |
ttgcatgcacctgataacaagcaccacatcctctgccgccaaggaaaatagatg |
224 |
Q |
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| T |
17445822 |
ttgcatgcacctgataacaagcaccacatcctctcccgccaaggaaaatagatg |
17445875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 9630556 - 9630611
Alignment:
| Q |
169 |
agttgcatgcacctgataacaagcaccacatcctctgccgccaaggaaaatagatg |
224 |
Q |
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| T |
9630556 |
agttacatgcacctgataacaagcaccacatcctctaccctcaaggaaaatagatg |
9630611 |
T |
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