View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_118 (Length: 240)
Name: NF9401_low_118
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_118 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 24964661 - 24964865
Alignment:
| Q |
19 |
catcaagaacaatgttctttataaacatttcccttctatgctcattttccacaagaactgcaccaatatctccaaaactttgtggtacttcaaattcagc |
118 |
Q |
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| T |
24964661 |
catcaagaacaatgttctttataaacatttcccttctatgctcattttccacaagaactgcaccaatatctccaaaactttgtggtacttcaaattcagc |
24964760 |
T |
|
| Q |
119 |
ttcatatttaatctcttccactgatctatgcgtttggtggacgtaacctttgattctttccttctccaatgttgtctctttttgaaccaaaaacaaggga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24964761 |
ttcatatttaatctcttccactgatctatgcgtttggtggacgtaacctttgattctttccttctccaattttgtctctttttgaaccaaaaacaaggga |
24964860 |
T |
|
| Q |
219 |
aaaat |
223 |
Q |
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||||| |
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| T |
24964861 |
aaaat |
24964865 |
T |
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