View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_119 (Length: 240)
Name: NF9401_low_119
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 5334490 - 5334342
Alignment:
| Q |
20 |
aatgagtgtagaagttattaaatgtcattttccttatgccttgactacatgcatcggcacactacatttgttatggtagggaaatttagattttgaatct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || || |
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| T |
5334490 |
aatgagtgtagaagttattaaatgtcattttccttatgccttgactacatgcatcggcagactacatttgttgtgggagggaaatttagattttcaacct |
5334391 |
T |
|
| Q |
120 |
atagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
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|||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
5334390 |
atagtgatgattaggaaaagcattaaagagaatttaatgcttggatgat |
5334342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 26981259 - 26981104
Alignment:
| Q |
14 |
caaaggaatgagtgtagaagttattaaatgtcattttccttatgcctt-gactacatgcatcggcacactacatttgttatggtagggaaatttagattt |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||| ||| |||||||||||||||| |
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| T |
26981259 |
caaagaaatgagtgtagaagttattaaatgtcattttccttatgtcttagactacatgcattggcagactacatttgttgtgggagggaaatttagattt |
26981160 |
T |
|
| Q |
113 |
tgaatctatagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
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|||| |||||| |||||||||||||| || | |||| ||||||||||||||||||| |
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|
| T |
26981159 |
tgaacctatagcgatgattaggaaaaacactaaggagaatttaatgcttggatgat |
26981104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 42935083 - 42934935
Alignment:
| Q |
20 |
aatgagtgtagaagttattaaatgtcattttccttatgccttgactacatgcatcggcacactacatttgttatggtagggaaatttagattttgaatct |
119 |
Q |
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||||||||||| || |||||||||||||||| ||||||| ||| |||||||||||||| |||| | || | || ||| |||||| ||||||||| || |
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| T |
42935083 |
aatgagtgtagtagctattaaatgtcatttttcttatgcattgggtacatgcatcggcagactaaaagtggtgtgagaggaaaatttggattttgaacct |
42934984 |
T |
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| Q |
120 |
atagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
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| ||||||||||||||||||||| |||| ||||||||| || |||||| |
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| T |
42934983 |
aaggtgatgattaggaaaagcattaaggagaatttaatgttttgatgat |
42934935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 26084107 - 26083972
Alignment:
| Q |
36 |
attaaatgtcattttccttatgccttgactacatgcatcggcacactacatttgttatggtagggaaatttagattttgaatctatag---tgatgatta |
132 |
Q |
| |
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|||||||| ||||||||||||| |||| |||||||||||||| |||| | || | || |||||||||| ||||||||| ||| || ||||||||| |
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| T |
26084107 |
attaaatgccattttccttatgtcttgggtacatgcatcggcagactaaaagtggtgtgagagggaaatttggattttgaacctagagtgatgatgatta |
26084008 |
T |
|
| Q |
133 |
ggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
| |
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||||||||| | || | |||||||||||| |||||| |
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| T |
26084007 |
ggaaaagcactaagaagaatttaatgctttgatgat |
26083972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 9045315 - 9045192
Alignment:
| Q |
45 |
cattttccttatgccttgactacatgcatcggcacactacatttgttatggtagggaaatttagattttgaatctatagtgatgattaggaaaagcattg |
144 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||| | || | || |||||||||| ||||||||| || |||||||||||||||||||| | |
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| T |
9045315 |
cattttccttatgccttgggtacatgcatcggcagactaaaagtggtgtgagagggaaatttggattttgaaccttgagtgatgattaggaaaagcacta |
9045216 |
T |
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| Q |
145 |
aggaaaatttaatgcttggatgat |
168 |
Q |
| |
|
|||| ||||||||| || |||||| |
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| T |
9045215 |
aggagaatttaatgttttgatgat |
9045192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 9045354 - 9045315
Alignment:
| Q |
20 |
aatgagtgtagaagttattaaatgtcattttccttatgcc |
59 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||| |
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| T |
9045354 |
aatgagtgtagtagctattaaatgtcattttccttatgcc |
9045315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 20077262 - 20077343
Alignment:
| Q |
87 |
ttgttatggtagggaaatttagattttgaatctatagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
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||||||||| || |||||||||| |||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
20077262 |
ttgttatgggagcgaaatttagaatttgaacctaaagtgatgattaggaaaagcactaaggtgaatttaatgcttggatgat |
20077343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 31442657 - 31442586
Alignment:
| Q |
97 |
agggaaatttagattttgaatctatagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
| |
|
||||||| || || |||||| || |||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
31442657 |
agggaaaatttgaatttgaacttagagtgatgattaggaaaagcacttaggagaatttaatgcttggatgat |
31442586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 2241374 - 2241440
Alignment:
| Q |
65 |
tacatgcatcggcacactacatttgttatggtagggaaatttagattttgaatctatagtgatgatt |
131 |
Q |
| |
|
|||||||||||||| | | || ||||| ||| ||||||||||||||||||||| || |||||||||| |
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|
| T |
2241374 |
tacatgcatcggcagagtgcaattgttgtgggagggaaatttagattttgaatttagagtgatgatt |
2241440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 9199866 - 9199819
Alignment:
| Q |
121 |
tagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
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|
||||||||||||||||||| | | |||| ||||||||||||||||||| |
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| T |
9199866 |
tagtgatgattaggaaaagaactaaggagaatttaatgcttggatgat |
9199819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 9201405 - 9201358
Alignment:
| Q |
121 |
tagtgatgattaggaaaagcattgaggaaaatttaatgcttggatgat |
168 |
Q |
| |
|
||||||||||||||||||| | | |||| ||||||||||||||||||| |
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|
| T |
9201405 |
tagtgatgattaggaaaagaactaaggagaatttaatgcttggatgat |
9201358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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