View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9401_low_121 (Length: 237)

Name: NF9401_low_121
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9401_low_121
NF9401_low_121
[»] chr8 (3 HSPs)
chr8 (43-215)||(1735317-1735489)
chr8 (10-215)||(17422857-17423062)
chr8 (10-213)||(22348769-22348972)
[»] chr3 (5 HSPs)
chr3 (10-215)||(14693229-14693434)
chr3 (34-227)||(10782167-10782360)
chr3 (13-200)||(10150777-10150964)
chr3 (22-211)||(7401993-7402182)
chr3 (40-200)||(13306894-13307054)
[»] chr7 (3 HSPs)
chr7 (10-175)||(18133578-18133743)
chr7 (40-215)||(14342659-14342834)
chr7 (15-200)||(18171652-18171837)
[»] scaffold0319 (1 HSPs)
scaffold0319 (10-215)||(9626-9831)
[»] scaffold0022 (1 HSPs)
scaffold0022 (10-200)||(11347-11537)
[»] chr2 (4 HSPs)
chr2 (10-200)||(23200647-23200837)
chr2 (10-200)||(22638304-22638494)
chr2 (10-200)||(23626276-23626466)
chr2 (10-197)||(24911884-24912070)
[»] chr4 (2 HSPs)
chr4 (10-200)||(13289385-13289575)
chr4 (10-215)||(14772570-14772775)
[»] chr6 (2 HSPs)
chr6 (10-206)||(23435091-23435287)
chr6 (10-215)||(19035181-19035386)
[»] scaffold0130 (1 HSPs)
scaffold0130 (10-200)||(43131-43321)
[»] scaffold0016 (2 HSPs)
scaffold0016 (10-200)||(126577-126767)
scaffold0016 (61-197)||(179311-179447)
[»] scaffold0040 (1 HSPs)
scaffold0040 (10-200)||(29608-29798)
[»] scaffold0241 (1 HSPs)
scaffold0241 (10-215)||(11460-11665)
[»] scaffold0108 (1 HSPs)
scaffold0108 (10-215)||(26194-26399)
[»] scaffold0001 (1 HSPs)
scaffold0001 (10-215)||(126763-126968)
[»] chr1 (2 HSPs)
chr1 (10-215)||(22805841-22806046)
chr1 (10-127)||(41380414-41380531)
[»] chr5 (1 HSPs)
chr5 (10-215)||(21510976-21511181)
[»] scaffold0282 (1 HSPs)
scaffold0282 (10-197)||(5559-5746)
[»] scaffold0005 (1 HSPs)
scaffold0005 (10-215)||(66955-67160)
[»] scaffold0064 (1 HSPs)
scaffold0064 (13-215)||(37596-37798)
[»] scaffold0656 (1 HSPs)
scaffold0656 (10-197)||(5028-5214)
[»] scaffold0026 (1 HSPs)
scaffold0026 (10-200)||(138991-139181)
[»] scaffold0023 (2 HSPs)
scaffold0023 (10-148)||(65238-65376)
scaffold0023 (10-148)||(74416-74554)
[»] scaffold0019 (1 HSPs)
scaffold0019 (10-197)||(159086-159273)
[»] scaffold0107 (1 HSPs)
scaffold0107 (10-158)||(1844-1992)
[»] scaffold0013 (4 HSPs)
scaffold0013 (61-197)||(75405-75541)
scaffold0013 (103-197)||(83876-83970)
scaffold0013 (103-197)||(121548-121642)
scaffold0013 (142-197)||(148842-148897)
[»] scaffold0046 (1 HSPs)
scaffold0046 (89-215)||(33613-33739)
[»] scaffold0362 (1 HSPs)
scaffold0362 (47-215)||(14463-14631)
[»] scaffold0053 (1 HSPs)
scaffold0053 (103-197)||(42285-42379)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 1735317 - 1735489
Alignment:
Q  43 cagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggaga 142  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1735317 cagaaagctgtgttcgagatggttaagaagccagcaacagaacgaatttcacccccattgtcaattctgaagaaagatcattcaaaagaagacgaggaga 1735416  T
Q  143 tgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtgga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  1735417 tgacttcaaatttcacggaatctgacccaagtcttgacatagtctgtaatgtggtttccatcttgcctgtgga 1735489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 17423062 - 17422857
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||   ||||  ||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||      
T  17423062 gacatcaccaatgttgacaaaacggaggataagcagaaagaggtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatct 17422963  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||||| ||| | ||    
T  17422962 tgaagaaagatcatcccaaagaggatgaggagatgacttcgaatttcacgggatctgacccgagcctcgacatagtttgcaatgtggtttctatcctacc 17422863  T
Q  210 tgtgga 215  Q
    ||||||    
T  17422862 tgtgga 17422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 22348972 - 22348769
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||     
T  22348972 gacatcaccaatgttgacaaagggaaaggcaagcagaaagttgtgttcgaaatggttaaaaaaccagcaatagagagaatctcacccccattgtcaattt 22348873  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||  | ||||||||| |||||||| || || |||||||||||||| ||| | ||    
T  22348872 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcattggatctgaccccagtcttgatatcgtatgcaatgtggtttcgatcctacc 22348773  T
Q  210 tgtg 213  Q
    ||||    
T  22348772 tgtg 22348769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 14693434 - 14693229
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||||||||||||   |||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||      
T  14693434 gacatcaccaatattgacaaaacggaggacaagcagaaagccgtgttcgaaatggttaaaaaaccagcaacagagagaatttcacccccattgtcaatct 14693335  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||    
T  14693334 tgaagaaagaccattccaaagaggataaggagatgacttcaaatttcacggaatctgacccaaacctcgacatagtttgcaatgtggtttctatcttgcc 14693235  T
Q  210 tgtgga 215  Q
    ||||||    
T  14693234 tgtgga 14693229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 10782167 - 10782360
Alignment:
Q  34 gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaag 133  Q
    |||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||| | |||||||    
T  10782167 gaggacaagcagaaagctgtgtttgagatggttaagaagccagcaacagagcgaatttcgcccccattgtcgattctgatgaaagatcatccaaaagaag 10782266  T
Q  134 atgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtggataatgatgtcca 227  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||||    
T  10782267 atgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatgatgtcca 10782360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 10150777 - 10150964
Alignment:
Q  13 atcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctga 112  Q
    ||||||||| ||||||||| |||||||||||  |||| |||||||||||||||||| |||||||  |||||| |||| |||||||||||||||||| |||    
T  10150777 atcaccaatgttgacaaaggagagggcaagcgaaaagatgtgttcgaaatggttaaaaaaccagtcacagagagaatctcacccccattgtcaattttga 10150876  T
Q  113 agaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    ||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||    
T  10150877 agaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtcttgacatagtatgcaatgtggtttc 10150964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 7402182 - 7401993
Alignment:
Q  22 attgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatc 121  Q
    ||||||||| | ||||  || |||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||| |||||||  ||     
T  7402182 attgacaaaatggaggataaacagaaagctgtgttcgaaatggttaagaaggcagcaacagaaagaatttcacccccattgtcaattttgaagaagtatt 7402083  T
Q  122 attccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctg 211  Q
     ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  7402082 gttccaaagaggatgaggagatgacttcaaatttcacggaatgtgacccgagtctcgacatagtttgcaatgtggtttcaatcctgcctg 7401993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 13307054 - 13306894
Alignment:
Q  40 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||| ||||| |    
T  13307054 aagcagaaaactgtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagaggatgaag 13306955  T
Q  140 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    | |||||||| |||||||||| ||||||||| ||||| || ||||||||||||||||||||    
T  13306954 atatgacttcgaatttcacgggatctgaccctagtctcgatatagtttgcaatgtggtttc 13306894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 18133743 - 18133578
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||||||||||||   ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133743 gacatcaccaatattgacaaaagggagggcaagcaaaaagttgtgttcgagatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 18133644  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 175  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133643 tgaagaaagatcgttccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtc 18133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 14342834 - 14342659
Alignment:
Q  40 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgagg 139  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||  ||||||||| |||||||    
T  14342834 aagcagaaagctgtgttcgaaatggttaagaaaccagcaacaaaaagaatttcacccccattgtcaattttgaagaaagattgttccaaagaggatgagg 14342735  T
Q  140 agatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtgga 215  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| ||||||||||    
T  14342734 agatgacttcaaatttcacggaatctgacccgagcctcgacatagtttgcaatgtggtttcaatcctgcctgtgga 14342659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 18171837 - 18171652
Alignment:
Q  15 caccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaag 114  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||  |||||    
T  18171837 caccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagaaagaatttcgcccccattgtcaatcttgaag 18171738  T
Q  115 aaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    ||||||||| |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| | ||||||||||||    
T  18171737 aaagatcatcccaaggaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtacaatgtggtttc 18171652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 9626 - 9831
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||     
T  9626 gacatcaccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattt 9725  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||| ||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||||| ||| | ||    
T  9726 taaagaaagaacatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacc 9825  T
Q  210 tgtgga 215  Q
    ||||||    
T  9826 tgtgga 9831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 11347 - 11537
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||||     
T  11347 gacatcaccaatgttgacaaaacagagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagagagaatctcgcccccattgtcaattt 11446  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||| |||||  ||||||| ||||||||||||||    
T  11447 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactgaatctgaccctagtctcaacatagtatgcaatgtggtttc 11537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 23200837 - 23200647
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  23200837 gacatcaccaatgttgacaaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 23200738  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||||| ||||||||| ||||| || ||||| ||||||||||||||    
T  23200737 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgatatagtgtgcaatgtggtttc 23200647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 22638304 - 22638494
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    ||||||||| || |||| |||  |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  22638304 gacatcaccgatgttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 22638403  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| ||||||||||||||    
T  22638404 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttc 22638494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 23626466 - 23626276
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||  |||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||      
T  23626466 gacatcaccaatgttgacaaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaatat 23626367  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||| ||||||||| |||| || ||||  || |||||||| |||||||| | ||||||||| ||||| |||||||| ||||||||||||||    
T  23626366 tgaaaaaagatcatcccaaggaggatgtagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttc 23626276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 24911884 - 24912070
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    ||||||||||||||||||||||   | || ||||||| |||||| |||||||||||||| |||||||||||| || ||||||||||||| ||||||||      
T  24911884 gacatcaccaatattgacaaagggaaaggaaagcagagagctgttttcgaaatggttaaaaaaccagcaacaaagagaatttcaccccc-ttgtcaatct 24911982  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    | ||||| || ||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  24911983 taaagaaggaccatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgacatagtatgcaatgtggt 24912070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 13289575 - 13289385
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| || |||||||||||||||     
T  13289575 gacatcaccaatgttgacaaaggagagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcgcccccattgtcaattt 13289476  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    | |||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| ||||||||||||||    
T  13289475 taaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttc 13289385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 14772775 - 14772570
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || || |||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  14772775 gacatcaccaatgttgacaaagggaaaggaaaacagagagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattc 14772676  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||| | ||    
T  14772675 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcgatcctacc 14772576  T
Q  210 tgtgga 215  Q
    ||||||    
T  14772575 tgtgga 14772570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 23435091 - 23435287
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||  |||||| |||||||| | ||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||     
T  23435091 gacatcaccaatgttgacaaaacagagggtaagcagaaggttgtgttcgaaatggttaagaaaccagcaatagagagaatctcgcccccattgtcaattt 23435190  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatctt 206  Q
    |||||||||||||| |||| || ||||| || |||||||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||| |||||    
T  23435191 tgaagaaagatcatcccaaggaggatgaagaaatgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttctatctt 23435287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 19035386 - 19035181
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||| |||||||||||| |||||| |||||||||| ||||| ||||||||||||||| |||| ||| | ||||||||||||     
T  19035386 gacatcaccaatgttgacaaaggagagggcaagcaaaaagctatgttcgaaatagttaaaaaaccagcaacagagagaatctcatctccattgtcaattt 19035287  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    |||||||| || || ||||| | ||||| || |||||||| |||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||| | ||    
T  19035286 tgaagaaaaataatcccaaaaaggatgaagaaatgacttcgaatttcactggatctgaccccagtcttgatattatatgcaatgtggtctcgatcctacc 19035187  T
Q  210 tgtgga 215  Q
    ||||||    
T  19035186 tgtgga 19035181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 43131 - 43321
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||| |||  |||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||     
T  43131 gacatcaccaatgttgataaaacagagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 43230  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||||||||||||| |||| || ||||| ||  ||||||| |||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  43231 tgaagaaagatcatcccaaggaggatgaagaactgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc 43321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 126767 - 126577
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    ||||||||| || |||| |||  |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||     
T  126767 gacatcaccgatgttgataaaacagagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattt 126668  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||||||||||||| ||||||| ||||| || |||||||| |||||||| | ||||||||| ||||| || ||||| ||||||||||||||    
T  126667 tgaagaaagatcatcccaaagaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgatatagtgtgcaatgtggtttc 126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 179447 - 179311
Alignment:
Q  61 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 160  Q
    |||||||| ||| |||| |||||  |||| || || || ||||||||| |||||||||| ||| | ||||| ||||| || ||||| || |||||| |      
T  179447 atggttaaaaaatcagccacagaaagaatctcccctcctttgtcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcgaatttctcca 179348  T
Q  161 aatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    | |||||||||||  | || ||||| |||||||||||    
T  179347 agtctgacccaagcttcgatatagtgtgcaatgtggt 179311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 29608 - 29798
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||||||||||||  | |||||||||| |||| |||||||||||||||||| |||||||| | |||| |||| |||||||| |||||||||     
T  29608 gacatcaccaatattgacaaaagaaagggcaagcaaaaagatgtgttcgaaatggttaaaaaaccagccatagagagaatctcacccccgttgtcaattt 29707  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    |||||||||||||| ||||||| ||||| || ||||| ||| ||||||| | ||||||||| || || |||||||| ||||||||||||||    
T  29708 tgaagaaagatcatcccaaagaggatgaagaaatgacctcagatttcaccggatctgaccccagcctagacatagtatgcaatgtggtttc 29798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 11460 - 11665
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| | |||||||   | || || ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||     
T  11460 gacatcaccaatgtagacaaagggaaaggaaaacagaaagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaatta 11559  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| |||||||| || || ||||||||||| || ||| | ||    
T  11560 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtcttgatatcgtatgcaatgtggtctcaatcctacc 11659  T
Q  210 tgtgga 215  Q
    ||||||    
T  11660 tgtgga 11665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 26194 - 26399
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| ||||||||| |||||  || |||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||     
T  26194 gacatcaccaatgttgacaaaggagaggataaacagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattt 26293  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    ||||||||||   |  ||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| |||||||| ||||| ||||| |||||| | ||    
T  26294 tgaagaaagactctctcaaggaggatgaagagatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaacgtggtgtccatcctacc 26393  T
Q  210 tgtgga 215  Q
    ||||||    
T  26394 tgtgga 26399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 126968 - 126763
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||| ||||| |||||||||   |||| ||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||||||||||||| ||||     
T  126968 gacatctccaatgttgacaaagggaagggaaagcagaaagcggtgttcgaaatggttaaaaaaccaacaacagagagaatctcacccccattgtgaattt 126869  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||| |||||||| || || ||||||||||| || ||| | ||    
T  126868 taaagaaagatcatcccaatgaggatgaagaaatgacttcaaatttcacgggatctgaccccagtcttgatatcgtatgcaatgtggtctcgatcctacc 126769  T
Q  210 tgtgga 215  Q
    ||||||    
T  126768 tgtgga 126763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 22806046 - 22805841
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || ||||||| |||||| || ||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  22806046 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgtatttgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattc 22805947  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| | ||| || ||||| ||||||||||| || ||| | ||    
T  22805946 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccaatctcgatatagtatgcaatgtggtctcaatcctacc 22805847  T
Q  210 tgtgga 215  Q
    ||||||    
T  22805846 tgtgga 22805841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 41380531 - 41380414
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||| |||||| ||||||||  | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||     
T  41380531 gacaccaccaacattgacaagatggagggcaagcagaaagctgtgttcgagatggttaagaagccagcaacagagcgaatttcacccccattgtcaattt 41380432  T
Q  110 tgaagaaagatcattcca 127  Q
    ||||||||||||||||||    
T  41380431 tgaagaaagatcattcca 41380414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 21510976 - 21511181
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||| ||||| |||||||||   | || ||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||     
T  21510976 gacatctccaatgttgacaaagggaaaggaaagcagaaagcggtgttcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattt 21511075  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| |||| || ||||| || ||||||||||||||||| | ||||||||| |||||||| ||  | ||||||||||| || ||||| |     
T  21511076 taaagaaagatcatcccaaggaggatgaagaaatgacttcaaatttcactggatctgaccccagtcttgatatcatatgcaatgtggtctcgatcttact 21511175  T
Q  210 tgtgga 215  Q
    ||||||    
T  21511176 tgtgga 21511181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 5746 - 5559
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || ||||||| || ||| || ||||||||| | ||||||||||||||| |||| |||||||||||||||||||    
T  5746 gacatcaccaatgttgacaaagggaaaggaaagcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattc 5647  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| || ||||| |||||||||||    
T  5646 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggt 5559  T

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Target: scaffold0005 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 66955 - 67160
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || || |||| || ||| || ||||||||| | ||||||||||||||| |||| |||||||||||||||||||    
T  66955 gacatcaccaatgttgacaaagggaaaggaaatcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattc 67054  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcc 209  Q
    | |||||||||||| ||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| || ||||| ||||||||||| || ||| | ||    
T  67055 taaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaatcctacc 67154  T
Q  210 tgtgga 215  Q
    ||||||    
T  67155 tgtgga 67160  T

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Target: scaffold0064 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 37798 - 37596
Alignment:
Q  13 atcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctga 112  Q
    ||||||||| ||| ||||| |||||  || |||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| |||    
T  37798 atcaccaattttgtcaaaggagaggttaaacagaaagctgtgttcgaaatggttaaaaagccagcaacatagagaatttcacccccattgtcaattttga 37699  T
Q  113 agaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgt 212  Q
    |||||||   | |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| || || ||||| || ||| | |||||    
T  37698 agaaagactttcccaaggaggatgaagatatgacttcgaatttcactggatctgaccctagtctcgacatagtatgtaacgtggtgtctatcctacctgt 37599  T
Q  213 gga 215  Q
    |||    
T  37598 gga 37596  T

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Target: scaffold0656 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 5028 - 5214
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||||||||||||| | |||| ||||| | |||||| |||||||||||||| || |||||||||||| |||| |||||||| ||||||||      
T  5028 gacatcaccaatattgacaaaggaaaggg-aagcaaatagctgttttcgaaatggttaaaaagccagcaacagagagaatctcaccccccttgtcaatct 5126  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    | |||||||| ||| |||| || ||||| || |||||||| |||||||| | ||||||||  ||||| |||||||| |||||||||||    
T  5127 taaagaaagaccatcccaaggaggatgaagaaatgacttcgaatttcactggatctgacctcagtctcgacatagtatgcaatgtggt 5214  T

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Target: scaffold0026 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 139181 - 138991
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || ||||||| |||||| |||||||||||||| |||||||||||| || | || ||||| || ||||||||      
T  139181 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgtattcgaaatggttaaaaaaccagcaacaaagaggatctcacctcccttgtcaatct 139082  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttc 200  Q
    | |||||||| ||| ||||||| ||||| || |||||||| |||||||| |  |||||||| ||||| |||||||| ||||||||||||||    
T  139081 taaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcactgggtctgaccctagtctcgacatagtatgcaatgtggtttc 138991  T

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Target: scaffold0023 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 65238 - 65376
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | |  |||||||||| |||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||     
T  65238 gacatcaccaatgttgacaaagggaaagtaaagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattt 65337  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgactt 148  Q
    | |||||||||||| ||||||| ||||| || |||||||    
T  65338 taaagaaagatcatcccaaagaggatgaagaaatgactt 65376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 74416 - 74554
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | |  |||||||||| |||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||     
T  74416 gacatcaccaatgttgacaaagggaaagtaaagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattt 74515  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgactt 148  Q
    | |||||||||||| ||||||| ||||| || |||||||    
T  74516 taaagaaagatcatcccaaagaggatgaagaaatgactt 74554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 159273 - 159086
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    ||||||||||||||||||||||   | || ||||||||||| || || ||||||||||| || |||||||||||  |||| ||||| || || |||||      
T  159273 gacatcaccaatattgacaaagggaaagggaagcagaaagccgtttttgaaatggttaaaaagccagcaacagaaagaatctcaccgcccttatcaatct 159174  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    |||||||| | ||| |||| || ||||| || |||||||| |||||||| | ||||||||| ||||| |||||||| |||||||||||    
T  159173 tgaagaaaaaccatcccaaggaggatgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggt 159086  T

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Target: scaffold0107 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 1844 - 1992
Alignment:
Q  10 gacatcaccaatattgacaaagtagagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattc 109  Q
    |||||||||||| |||||||||   | || ||||||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||| ||||||||      
T  1844 gacatcaccaatgttgacaaagggaaaggaaagcagagagctgttttcgaaatggttaaaaaaccagcaacagagagaatctcaccccccttgtcaatct 1943  T
Q  110 tgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcac 158  Q
    | |||||||| ||| ||||  | ||||| || |||||||| ||||||||    
T  1944 taaagaaagaccatcccaagtaggatgaagaaatgacttcgaatttcac 1992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 75405 - 75541
Alignment:
Q  61 atggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacgg 160  Q
    |||||||| |||||||| || ||  |||| || || || || |||||| |||||||||| ||| | ||||| ||||| || ||||| ||||||||||| |    
T  75405 atggttaaaaaaccagccacggaaagaatctcccctcctttatcaattttgaagaaagaccatcctaaagaggatgaagaaatgacgtcaaatttcacag 75504  T
Q  161 aatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    |||||||| ||||||| || ||||| |||||||||||    
T  75505 aatctgactcaagtctcgatatagtatgcaatgtggt 75541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 83876 - 83970
Alignment:
Q  103 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  83876 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 83970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 121548 - 121642
Alignment:
Q  103 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    |||||| |||||||||| ||| | ||||| |||||  | ||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  121548 tcaattttgaagaaagaccatactaaagaggatgaaaaaatgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt 121642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 148842 - 148897
Alignment:
Q  142 atgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    ||||| |||||||||||  |||||||||||||||| || ||||| |||||||||||    
T  148842 atgacgtcaaatttcacaaaatctgacccaagtctcgatatagtatgcaatgtggt 148897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 33613 - 33739
Alignment:
Q  89 tttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttg 188  Q
    ||||||| || || |||||  |||||||||| ||| ||||||| ||||| || |||||||| |||||||  | ||||||||| ||||| |||||||| ||    
T  33613 tttcacctcccttatcaatcttgaagaaagaccatcccaaagaggatgaagaaatgacttcgaatttcattggatctgaccccagtctcgacatagtgtg 33712  T
Q  189 caatgtggtttccatcttgcctgtgga 215  Q
    ||||||||| ||  | |||||||||||    
T  33713 caatgtggtgtcagttttgcctgtgga 33739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 14463 - 14631
Alignment:
Q  47 aagctgtgttcgaaatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcattccaaagaagatgaggagatgac 146  Q
    ||||||| |||||||||||||| |||||||| || ||  |||| || || || || |||||| |||||| ||||||| | || || ||||| || |||||    
T  14463 aagctgttttcgaaatggttaaaaaaccagccacggaaagaatctcccctcccttatcaattttgaagagagatcatcctaaggaggatgaagaaatgac 14562  T
Q  147 ttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggtttccatcttgcctgtgga 215  Q
    ||| |||||||| | |||| |||| ||||| || ||| | |||||||| || ||  | |||||||||||    
T  14563 ttcgaatttcactggatctaaccccagtctcgatataatatgcaatgtcgtgtcagttttgcctgtgga 14631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 42379 - 42285
Alignment:
Q  103 tcaattctgaagaaagatcattccaaagaagatgaggagatgacttcaaatttcacggaatctgacccaagtcttgacatagtttgcaatgtggt 197  Q
    |||||| |||||||| ||||| | || || ||||| || ||||| || |||||||| |||||||| |||||||| || ||||| |||||||||||    
T  42379 tcaattttgaagaaaaatcatcctaaggaggatgaagaaatgacgtcgaatttcactgaatctgatccaagtctcgatatagtgtgcaatgtggt 42285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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