View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_125 (Length: 229)
Name: NF9401_low_125
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_125 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20018947 - 20019175
Alignment:
| Q |
1 |
catgaaattttattataagatagcaaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018947 |
catgaaattttattataagatagcaaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcctgc |
20019046 |
T |
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| Q |
101 |
cacaaaaaggatttacttagacttttttgccgaaaattttatattgcaagtgcagagcacattatattcataaaccaaatatttatataaaaaataatcg |
200 |
Q |
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| T |
20019047 |
cacaaaaaggatttaattagacttttttgccgaaaattttatattgcaactgcagagcacattatattcataaaccaaatatttatataaaaactaatcg |
20019146 |
T |
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| Q |
201 |
ataaacatactttgttactgtcatcttga |
229 |
Q |
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| T |
20019147 |
ataaacatactttgttactgtcatcttga |
20019175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 20000144 - 20000280
Alignment:
| Q |
1 |
catgaaattttattataagatag-caaaaga--aatatccatatttttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcc |
97 |
Q |
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|||||| |||||||||| ||||| ||||||| || ||||||| | ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
20000144 |
catgaatttttattatatgatagtcaaaagagaaaaatccataatcttaccatcctcagaaattatgttagatttctgcttcttacttaaaggagaatcc |
20000243 |
T |
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| Q |
98 |
tgccacaaaaaggatttacttagacttttttgccgaa |
134 |
Q |
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| T |
20000244 |
tgtcacagaaaggatgtaattagacttttttgccgaa |
20000280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 20000285 - 20000352
Alignment:
| Q |
162 |
ttatattcataaaccaaatatttatataaaaaataatcgataaacatactttgttactgtcatcttga |
229 |
Q |
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| T |
20000285 |
ttatattcatcaaccacatatttatgtaaaaaataatcgataaacatactttgttactgtcatcttga |
20000352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 20029185 - 20029233
Alignment:
| Q |
181 |
atttatataaaaaataatcgataaacatactttgttactgtcatcttga |
229 |
Q |
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| T |
20029185 |
atttatataaaaattaatcgataaacatactttgttactatcatcttga |
20029233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 20009500 - 20009618
Alignment:
| Q |
25 |
aaaagaaatatccatatttttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagactt |
124 |
Q |
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| T |
20009500 |
aaaagaaaaatcgataatcttaccatcaccaataatcatgttagatcttttcttcatacttaaaggagaatcctgctaaagaaaggatgtaattagacat |
20009599 |
T |
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| Q |
125 |
ttttgccgaaaattttatat |
144 |
Q |
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| T |
20009600 |
ttttgtcg-aaattttatat |
20009618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 20009698 - 20009773
Alignment:
| Q |
152 |
gcagagcacattatattcataaaccaaatatttatataaaaaataatcgataaacatactttgttactgtcatcttga |
229 |
Q |
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| T |
20009698 |
gcagaacacattacattcatcaaccacat--ttatatgaaaatttatcgataaacatacttcgttactatcatcttga |
20009773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 12573460 - 12573376
Alignment:
| Q |
44 |
ttaccatcctcagtaatcatgttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagactttttt |
128 |
Q |
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| T |
12573460 |
ttaccatccgcagtaatcatgttagatttatgcttcttagttaaaggagaattctgccacagaaaggatgtaattagactttttt |
12573376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 12573280 - 12573202
Alignment:
| Q |
152 |
gcagagcacattatattcataaaccaaatatttatataaaaaat-aatcgataaacatactttgttactgtcatcttga |
229 |
Q |
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| T |
12573280 |
gcagaacacgttacattcatcacccacatttttatataaaaaattaaacgatcaacatactttgttactgtcatcttga |
12573202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 19000286 - 19000216
Alignment:
| Q |
64 |
gttagatttctgcttcttgcttaaaggagaatcctgccacaaaaaggatttacttagacttttttgccgaa |
134 |
Q |
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| T |
19000286 |
gttagattttagattctttcttgaaggaaaatcctgccacaaaaatgatataattagacttttttgccgaa |
19000216 |
T |
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