View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_13 (Length: 575)
Name: NF9401_low_13
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 48 - 565
Target Start/End: Complemental strand, 2425290 - 2424773
Alignment:
| Q |
48 |
ttcttttacttctttgaagattattcctcaatcagtttgttcccggtatggtttaacgatcggtgcaacggtggctccgattgttcgtgttcttgtgtgg |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425290 |
ttcttttacttctttgaagattattcctcaatcagtttgttcccggtatggtttaacaatcggtgcaacggtggctccgattgttcgtgttcttgtgtgg |
2425191 |
T |
|
| Q |
148 |
atatgtttacctgttgcttatccaattagcaaggtgcatgatacaaatacattcaacatgatatttatttgaataaaacttgaccaatttgattttaaaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2425190 |
atatgtttacctgttgcttatccaattagcaaggtgcatgatacaaatacattcaacatgatatttatttgaacaaaacttgaccaatttgattttaaaa |
2425091 |
T |
|
| Q |
248 |
tcttgatttcattgtgttctattcagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaattt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2425090 |
tcttgatttcattgtgttctattcagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaattt |
2424991 |
T |
|
| Q |
348 |
acatggtaatgaggtatatatcatagctacatgtttttgtagattgatcaattgattcagtggctttgagacaatttcagagactaaattcgccgaatcc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
2424990 |
gcatggtaatgaggtatatatcatagctacatgtttttttagattgatcaattgattcagtggcttcgagacaatttcagagactaaattcgccaagtcc |
2424891 |
T |
|
| Q |
448 |
aaaagactaatgtgattggtgattttaactctagaattgtttaggaattttaagaccaaattattgttgttgctccatttatattaggctgggaaaggtg |
547 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2424890 |
aaaagactaatgtgattgatgattttaactctagaattgtttaggaattttaagaccaaattattgttgttgctccatttatattaggctgggaaaggtg |
2424791 |
T |
|
| Q |
548 |
gtgaactaacacatgatg |
565 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2424790 |
gtgaactaacacatgatg |
2424773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 36723656 - 36723747
Alignment:
| Q |
271 |
cagttgttggattatttgttagggcatagacaagaagcgctttttcgcagagctgagttgaaaacacttgtaaatttacatggtaatgaggt |
362 |
Q |
| |
|
||||||||||| |||||| | || ||| || | ||||| ||||| |||||||| |||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
36723656 |
cagttgttggactatttgctgggtcatcgaaatgaagcccttttccgcagagccgagttgaaaacactagtagatttgcatggtaatgaggt |
36723747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 36723418 - 36723539
Alignment:
| Q |
62 |
tgaagattattcctcaatcagtttgttcccggtatggtttaacgatcggtgcaacggtggctccgattgttcgtgttcttgtgtggatatgtttacctgt |
161 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||||| | || |||||| | || |||| |||| || || ||||| |||||||||| || || |
|
|
| T |
36723418 |
tgaagattataccccaatcagtttgttctcgatatggtttggccattggtgcatcagtcactccttttgtccgcgtgcttgtatggatatgttatccagt |
36723517 |
T |
|
| Q |
162 |
tgcttatccaattagcaaggtg |
183 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
36723518 |
tgcttttccaattagcaaggtg |
36723539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University