View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_130 (Length: 220)
Name: NF9401_low_130
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_130 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 47494142 - 47494326
Alignment:
| Q |
17 |
agtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttccttcaaagac |
116 |
Q |
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| T |
47494142 |
agtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttccttcaaagac |
47494241 |
T |
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| Q |
117 |
ataataatcatcttccaattgaaactgtgatagccctggcacattacactcctccatctttgcagccagagaaagacatgcaattgat |
204 |
Q |
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| T |
47494242 |
---ataatcatcttccaattgaaactgtgatagctctggcacattacactcctccatctttgcagccagagaaagacatgcaattgat |
47494326 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 24221342 - 24221431
Alignment:
| Q |
17 |
agtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttc |
106 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||| ||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
24221342 |
agtaagaaaggaatgaaaagggagtgataatactcatgttccaatctaatctgctaagaacaaaaagctccattttttgaactacttttc |
24221431 |
T |
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