View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_131 (Length: 220)
Name: NF9401_low_131
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_131 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19780313 - 19780182
Alignment:
| Q |
1 |
ttaactataacaaagttttgaagtaaatgcaagaaaagatgatattttcattttgttatctatttatagatcagtcaatagataataaatatactcgagt |
100 |
Q |
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| T |
19780313 |
ttaactataacaaagttttgaagtaaatgcaagagaagatgatattttcattttcttatctatttatagatcaatcaatagataataaatatactcaagt |
19780214 |
T |
|
| Q |
101 |
ctaaaaatatttgtaaccaacccattgatatg |
132 |
Q |
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| T |
19780213 |
ctaaagatatttgtaaccaacccattgatatg |
19780182 |
T |
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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 32578208 - 32578296
Alignment:
| Q |
40 |
tgatattttcattttgttatctatttatagatcagtcaatagataataaatatactcgagtctaaaaatatttgtaaccaacccattga |
128 |
Q |
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| T |
32578208 |
tgatattttcattttctcatctatgtatagaccaatcaatagataataaatctgctcaagtctaaagatatttgtaaccaacccattga |
32578296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 14750033 - 14749980
Alignment:
| Q |
75 |
tcaatagataataaatatactcgagtctaaaaatatttgtaaccaacccattga |
128 |
Q |
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|||||||||||||||| | ||| |||||||| ||| |||||||||||| ||||| |
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| T |
14750033 |
tcaatagataataaatttgctcaagtctaaagatagttgtaaccaacctattga |
14749980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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