View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9401_low_136 (Length: 214)

Name: NF9401_low_136
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9401_low_136
NF9401_low_136
[»] chr3 (3 HSPs)
chr3 (8-139)||(20787728-20787860)
chr3 (8-139)||(10028233-10028364)
chr3 (17-139)||(38348777-38348900)
[»] chr1 (1 HSPs)
chr1 (13-139)||(40700552-40700679)
[»] chr4 (2 HSPs)
chr4 (13-139)||(42614844-42614973)
chr4 (66-139)||(18070202-18070275)
[»] scaffold0003 (1 HSPs)
scaffold0003 (66-139)||(56007-56080)
[»] chr6 (2 HSPs)
chr6 (13-130)||(12515428-12515544)
chr6 (66-139)||(27431283-27431356)
[»] scaffold0061 (2 HSPs)
scaffold0061 (13-55)||(35263-35305)
scaffold0061 (98-139)||(35349-35392)
[»] scaffold0017 (2 HSPs)
scaffold0017 (13-55)||(163474-163516)
scaffold0017 (98-139)||(163387-163430)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 20787860 - 20787728
Alignment:
Q  8 atgagatggacatcatagatctacccaagagaaaattagataatgtaa-nnnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnncatctataa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||| ||        |||||||||    
T  20787860 atgacatggacatcatagatctacccaagagaaaattagataatgtaattttttttttttgtggagaatgtccatttgtttggttttttttcatctataa 20787761  T
Q  107 tatatgttatgttcggtttcatattctattgaa 139  Q
    |||||||||||||||||||||||||||||||||    
T  20787760 tatatgttatgttcggtttcatattctattgaa 20787728  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 10028364 - 10028233
Alignment:
Q  8 atgagatggacatcatagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnn-catctataa 106  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||||||||||||||         |||||||||    
T  10028364 atgacatggacatcatagatctatccaagagaaaattagataatgtaattttttttt-tgtggagaatgtccatttgttgggtttttttttcatctataa 10028266  T
Q  107 tatatgttatgttcggtttcatattctattgaa 139  Q
    |||||||||||||||||||||||||||||||||    
T  10028265 tatatgttatgttcggtttcatattctattgaa 10028233  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 38348777 - 38348900
Alignment:
Q  17 acatcatagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnn-catctataatatatgtta 115  Q
    |||||||||||||| ||||||||||||||||||||||||          ||||||||||||||||||||||||         ||||||||||||||||||    
T  38348777 acatcatagatctaaccaagagaaaattagataatgtaatttctttttttgtggagaatgtccatttgttgggtttttttttcatctataatatatgtta 38348876  T
Q  116 tgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||    
T  38348877 tgttcggtttcatattctattgaa 38348900  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 40700552 - 40700679
Alignment:
Q  13 atggacatcatagatctacccaagagaaaattagataatgtaa-nnnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnncatctataatatat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||           |||||| |||||||||||||||||        ||||||||||||||    
T  40700552 atggacatcatagatctacccaagagaaaattagataatgtaattttttttttttgtggaaaatgtccatttgttgggttttttttcatctataatatat 40700651  T
Q  112 gttatgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||||||    
T  40700652 gttatgttcggtttcatattctattgaa 40700679  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 42614844 - 42614973
Alignment:
Q  13 atggacatcatagatctacccaagagaaaattagataatgtaa---nnnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnncatctataatat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||             |||||| |||||||||||||||||        |||||| |||||    
T  42614844 atggacatcatagatctacccaagagaaaattagataatgtaattttttttttttttgtggaaaatgtccatttgttgggttttttttcatctaaaatat 42614943  T
Q  110 atgttatgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||||||||    
T  42614944 atgttatgttcggtttcatattctattgaa 42614973  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 18070275 - 18070202
Alignment:
Q  66 tgtggagaatgtccatttgttgggnnnnnnnncatctataatatatgttatgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  18070275 tgtggagaatgtccatttgttgggtttttttccatctataatatatgttatgttcggtttcatattctattgaa 18070202  T

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Target: scaffold0003 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 56080 - 56007
Alignment:
Q  66 tgtggagaatgtccatttgttgggnnnnnnnncatctataatatatgttatgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  56080 tgtggagaatgtccatttgttgggtttttttccatctataatatatgttatgttcggtttcatattctattgaa 56007  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 12515428 - 12515544
Alignment:
Q  13 atggacatcatagatctacccaagagaaaattagataatgtaannnnnnnnngtgtggagaatgtccatttgttgggnnnnnnnncatctataatatatg 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||          | ||||||||||||||||||||||        |||||||||||||||    
T  12515428 atggacatcatagatctacccaaaagaaaattagataatgtaattttattttttttggagaatgtccatttgttggg-tttttttcatctataatatatg 12515526  T
Q  113 ttatgttcggtttcatat 130  Q
    ||||||||||||||||||    
T  12515527 ttatgttcggtttcatat 12515544  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 27431283 - 27431356
Alignment:
Q  66 tgtggagaatgtccatttgttgggnnnnnnnncatctataatatatgttatgttcggtttcatattctattgaa 139  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  27431283 tgtggagaatgtccatttgttgggtttttttccatctataatatatgttatgttcggtttcatattctattgaa 27431356  T

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Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 35263 - 35305
Alignment:
Q  13 atggacatcatagatctacccaagagaaaattagataatgtaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35263 atggacatcatagatctacccaagagaaaattagataatgtaa 35305  T

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Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 35349 - 35392
Alignment:
Q  98 catctataatatatgttat--gttcggtttcatattctattgaa 139  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  35349 catctataatatatgttatatgttcggtttcatattctattgaa 35392  T

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Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 163516 - 163474
Alignment:
Q  13 atggacatcatagatctacccaagagaaaattagataatgtaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  163516 atggacatcatagatctacccaagagaaaattagataatgtaa 163474  T

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Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 163430 - 163387
Alignment:
Q  98 catctataatatatgttat--gttcggtttcatattctattgaa 139  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  163430 catctataatatatgttatatgttcggtttcatattctattgaa 163387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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