View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_137 (Length: 211)
Name: NF9401_low_137
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_137 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 7013363 - 7013553
Alignment:
| Q |
19 |
aagaaggaagctagtttgactatttgtttctatgatccacctggtaatgttattggagagagtccattttgactgat-------------gatatgaata |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7013363 |
aagaaggaagctagtttgactatttgtttctatgatccacctggtaatgttattggagagagtccattttgactgatgataatgtatgatgatatgaata |
7013462 |
T |
|
| Q |
106 |
atatgatgtatttcaagtaatgttacttttttcttcaattaaattatgtaagtttaatgtaacctgtgctacagagatcaatatgcctatg |
196 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7013463 |
acatgatgtatttcaagtaatgttacttttttcttcaattaaattatgtaagtttaatgtaacctgtgctacagagatcaatatgcctatg |
7013553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 7006979 - 7007175
Alignment:
| Q |
19 |
aagaaggaagctagtttgactatttgtttctatgatccacctg------gtaatgttattggagagagtccattttga-------------ctgatgata |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
7006979 |
aagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggagagagtccattttgattggtgtttatgtatgatgata |
7007078 |
T |
|
| Q |
100 |
tgaataatatgatgtatttcaagtaatgttacttt------tttcttcaattaaattatgtaagtttaatgtaacctgtgctacagagatcaatatg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
7007079 |
tgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatatg |
7007175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 33556371 - 33556317
Alignment:
| Q |
29 |
ctagtttgactatttgtttctatgatccacctggtaatgttattggagagagtcc |
83 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| ||| | ||||||||||||| |
|
|
| T |
33556371 |
ctagtttgagtatttgtttctattatccacctgggaattatgttggagagagtcc |
33556317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University