View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_140 (Length: 203)
Name: NF9401_low_140
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 13848174 - 13848359
Alignment:
| Q |
2 |
agagacaattgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagta |
101 |
Q |
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| T |
13848174 |
agagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagta |
13848273 |
T |
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| Q |
102 |
gaagatggaggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttga |
187 |
Q |
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| T |
13848274 |
gaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttga |
13848359 |
T |
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Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 34343782 - 34343955
Alignment:
| Q |
11 |
tgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagtagaagatgga |
110 |
Q |
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|||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
111 |
ggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttga |
187 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttga |
34343955 |
T |
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