View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_15 (Length: 538)
Name: NF9401_low_15
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 302 - 528
Target Start/End: Complemental strand, 39824994 - 39824768
Alignment:
| Q |
302 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctctagtttctcaatctctctatgacgcaattcacacattcacta |
401 |
Q |
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| T |
39824994 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctgtagtttctcaatctctctatgacgcaattcacacattcacta |
39824895 |
T |
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| Q |
402 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
501 |
Q |
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| T |
39824894 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
39824795 |
T |
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| Q |
502 |
caacatccaaagctttaactacctttg |
528 |
Q |
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| T |
39824794 |
caacatccaaagctttaactacctttg |
39824768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39825285 - 39825021
Alignment:
| Q |
1 |
catgtgcagaatttttcacataaactctactccaaaaattggatctcttcccaatgactaaggtatctactaccatatactatggnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
39825285 |
catgtgcagaatttttcacataaactctactccaaaaattggatctcttcccaatgactaaggtatctactaccatatactatggtttattttt------ |
39825192 |
T |
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| Q |
101 |
nnaattatctatggtccgctacctcaatataaaggactttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgta |
200 |
Q |
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| T |
39825191 |
--aattatctatggtccgctaccgcaatataaaggattttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgta |
39825094 |
T |
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| Q |
201 |
atataaaggttcactccgtcgacctcaaggttatagcataactgcaaccacaatttaaaaccagggtatcaac |
273 |
Q |
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| T |
39825093 |
atataaaggttcactccgtcggcctcaaggtcatagcatatctacaaccgcaatttaaaaccagggtatcaac |
39825021 |
T |
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