View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_2 (Length: 675)
Name: NF9401_low_2
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 320 - 657
Target Start/End: Complemental strand, 35557444 - 35557107
Alignment:
| Q |
320 |
tcaatcatgaaaatctcaactgttgagcattattttgtttacatttagccacatgtagtttagcaagtcaagttgaaatttgggaggtgtgttaaagaag |
419 |
Q |
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| T |
35557444 |
tcaatcatgaaaatctcaactgttgagcattattttgtttacatttagctacatgtagtttagcaagtcaagttgaaatttgggaggtgtgttaaagaag |
35557345 |
T |
|
| Q |
420 |
aggttgttaagagtgtgaacaaagattgacttttagagcatgagagcaccattttgagttgttgagcttgagcccacacaattacaaacaccataattaa |
519 |
Q |
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| T |
35557344 |
aggttgttaagagtgtgaacaaagattgacttttagagcatgagagcaccattttgagttgttgagcttgagcccacacaattacaaacaccataattaa |
35557245 |
T |
|
| Q |
520 |
caattttacttctttgtcacctttcaataccccccatcattaaaaatagacatgtttaggtgcaagcttgtatggtaggtgccagcttgactagagggat |
619 |
Q |
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| T |
35557244 |
caattttacttctttgtcacctttcaataccccccatcattaaaaatagacatgtttaggtgcaagcttctatggtaggtgccagcttgactagagggat |
35557145 |
T |
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| Q |
620 |
agaatccatacaagaaatggatcggttaatgccaatta |
657 |
Q |
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| T |
35557144 |
ataatccatacaagaaatggattggttaatgccaatta |
35557107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 35557721 - 35557442
Alignment:
| Q |
1 |
atgttagtagctagagattctgttggtatttttcgctcgccaaccaagctacatacgcgagacatgtatgctacaactaaaatatcatgtatgcttaagt |
100 |
Q |
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| T |
35557721 |
atgttagtagttagagattctgttggtatttttcgctcgccaaccaagctacatacgcgagacatgtatgctacaactaaaatatcatgtatgcttaagt |
35557622 |
T |
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| Q |
101 |
-ataatgtgtcactaactcactgttgttttgacaaatgctatactctaaagcttcaacaaaattacagtgttgccgtaatttcatcaaaatcaccttgat |
199 |
Q |
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| T |
35557621 |
tataatgtgtcagtaactcactgttgttttgacgaatgttatactctaaagcttcaacaaaattacaatgttgccgtaatttcatcaaaatcaccttgat |
35557522 |
T |
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| Q |
200 |
ttccacatgcaccgaaacacaggtagattttatttgcaacttctctttttatccactggtttgaactacacaccaaatca |
279 |
Q |
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| T |
35557521 |
ttccacatgcactgaaacacaggtagattttatttgcaacttctctttttatccactggtttgaactacacaccaaatca |
35557442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 272 - 471
Target Start/End: Complemental strand, 35554832 - 35554631
Alignment:
| Q |
272 |
ccaaatcattatacttcatgttacttttagattagatcactaaagagttcaatcatgaaa------atctcaactgttgagcattattttgtttacattt |
365 |
Q |
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| T |
35554832 |
ccaaatcattgtccttaatgttaccttcagattagatcactaa-gagttcaatcatgaacttgaagatctcaacttttgaacattattgtgtttacattt |
35554734 |
T |
|
| Q |
366 |
agccacatgtagtttagcaagtcaagttgaaatttgggaggtgtgttaaagaagaggttgttaagagtgtgaacaaagattgacttttagagcatgagag |
465 |
Q |
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||| || ||||||| |||||| | | ||| || ||||||||| |||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
35554733 |
agctgcacatagtttaccaagtctaatacaaaattaagaggtgtgt---agaagaagtggtcaagagtgtgaacaaagattgacttttagagcatgagaa |
35554637 |
T |
|
| Q |
466 |
caccat |
471 |
Q |
| |
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|||||| |
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| T |
35554636 |
caccat |
35554631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 531
Target Start/End: Complemental strand, 35554621 - 35554585
Alignment:
| Q |
495 |
acacaattacaaacaccataattaacaattttacttc |
531 |
Q |
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| T |
35554621 |
acacaattacaaacatcataattaacacttttacttc |
35554585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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