View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_20 (Length: 503)
Name: NF9401_low_20
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 32853424 - 32853902
Alignment:
| Q |
13 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853424 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
32853523 |
T |
|
| Q |
113 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
212 |
Q |
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| T |
32853524 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
32853623 |
T |
|
| Q |
213 |
gatcattaatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaaca |
312 |
Q |
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| T |
32853624 |
gatcattaatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaaca |
32853723 |
T |
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| Q |
313 |
atctctacttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgc-aaataaagcaataagaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32853724 |
atctctacttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaatt |
32853823 |
T |
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| Q |
412 |
agaattacctcgtatcctttctcctcctcttcctctgtatccagaatgccttccatgacctctgttggaaggatgtcca |
490 |
Q |
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| T |
32853824 |
agaattacctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtcca |
32853902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 37176560 - 37177037
Alignment:
| Q |
13 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176560 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
37176659 |
T |
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| Q |
113 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
37176660 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttt |
37176759 |
T |
|
| Q |
213 |
gatcattaatcatagtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaaca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37176760 |
tatcattaatcatagtagagaataacttatttgcatcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaaca |
37176859 |
T |
|
| Q |
313 |
atctctacttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaatta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176860 |
atctctacttgaatggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaatta |
37176959 |
T |
|
| Q |
413 |
gaattacctcgtatcctttctcctcctcttcctctgtatccagaatgccttccatgacctctgttggaaggatgtcca |
490 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
37176960 |
gaattacctcgtatcctttctcctcctcttcctttgtatccataatgccttccatgacctatgttggaaggatgtcca |
37177037 |
T |
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