View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_21 (Length: 486)
Name: NF9401_low_21
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 35364404 - 35363944
Alignment:
| Q |
1 |
ttagttttctagatatttctctgagggattaattaagttacaatatgtctactattatgtgttaccatatcttatctcttcacttctcttatctcttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35364404 |
ttagttttctagatatttctctgagggattaattaagttacaatatgtctactagtatgtgttaccatatcttatctcttctcttctcttatctcttatt |
35364305 |
T |
|
| Q |
101 |
aataaagcttattaggttaagcgattgcttaaccccaatcaacaaagatttcccgtccttgctatcattaaatgcatggttatacattgtgatcaatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364304 |
aataaagcttattaggttaagcgattgcttaaccccaatcaacaaagatttcccgtccttgctatcattaaatgcatggttatacattgtgatcaatgac |
35364205 |
T |
|
| Q |
201 |
tgatttaatgagggataacaaaagattggtgtttgttgaacgtgttcctataatttttccttccattatgaatcagagggagcgaagacagtgacagaag |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
35364204 |
tgatttaatgagggataacaaaagattagtgtttgttgaacgtgttcctatagtttttcctcccattatgaatcagagggagtgaagacagtgacagaag |
35364105 |
T |
|
| Q |
301 |
gtgaatgttcaatccataaaagcaattagagggatttc-nnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattcatcgta |
399 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35364104 |
gtgaatgttcaatacataaaagcaattagagggatttcaaaaaaaatcattggaaggtgattgtcatgatcgttgatgatctagatcggcattcatcgta |
35364005 |
T |
|
| Q |
400 |
atattcattgattttggattggatgtattga--tctctctcccatctaattatttctctga |
458 |
Q |
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| T |
35364004 |
atattcattgattttggattggatgtattgatctctctctcccatctaattatttctctga |
35363944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 32662635 - 32662747
Alignment:
| Q |
295 |
cagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatctagatcggtattca |
394 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32662635 |
cagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtgattgtcatgatcgttgctgatctagatcggtattca |
32662734 |
T |
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| Q |
395 |
tcgtaatattcat |
407 |
Q |
| |
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|| |||||||||| |
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| T |
32662735 |
tcataatattcat |
32662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 32656111 - 32656147
Alignment:
| Q |
295 |
cagaaggtgaatgttcaatccat-aaaagcaattaga |
330 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32656111 |
cagaaggtgaatgttcaatccataaaaagcaattaga |
32656147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 437
Target Start/End: Original strand, 21786651 - 21786803
Alignment:
| Q |
283 |
cgaagacagtgacagaaggtgaatgttcaatccataaaagcaattagagggatttcnnnnnnntcattggaaggtgattgtcatgatcgttgatgatcta |
382 |
Q |
| |
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||||||||||| | || ||||| | ||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
21786651 |
cgaagacagtggcggagggtgattattcaatcgatacaagcaattagagggatttttaaaaattcaccggaaggtgattgtcatgatcgttgatgatcta |
21786750 |
T |
|
| Q |
383 |
gatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
437 |
Q |
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||| ||||||| || |||||||||||| ||||||| ||||||| | ||||||| |
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| T |
21786751 |
gataggtattcttcataatattcattg--gttggattcgatgtatcggtctctct |
21786803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 38682039 - 38682108
Alignment:
| Q |
366 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
437 |
Q |
| |
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|||||||| ||||||||||| ||||||| || |||||||||||| |||||||| |||||| | ||||||| |
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| T |
38682039 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38682108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 38683292 - 38683361
Alignment:
| Q |
366 |
tgatcgttgatgatctagatcggtattcatcgtaatattcattgattttggattggatgtattgatctctct |
437 |
Q |
| |
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|||||||| ||||||||||| ||||||| || |||||||||||| |||||||| |||||| | ||||||| |
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| T |
38683292 |
tgatcgtttatgatctagataggtattcttcataatattcattg--gttggattgaatgtatcggtctctct |
38683361 |
T |
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