View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_24 (Length: 481)
Name: NF9401_low_24
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Complemental strand, 23378464 - 23378009
Alignment:
| Q |
9 |
aatgaacatgaacaaaacaagagcctatatatacacacaactttatcctaatcgatcagagcgcgtccatgaaattcatccgtaaaatggattgcgttaa |
108 |
Q |
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| T |
23378464 |
aatgaacatgaacaaaacaagagcctatatatacacacaactttatcctaatcgatcggagcgcgtccatgaaattcatc-gtaaaatggactgcgttaa |
23378366 |
T |
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| Q |
109 |
aactgtagcgatttatatggaggtttctaagatcgattgattataacgtatgacctaccacatgtgtcagtatattgattgtctccgtactccagaccta |
208 |
Q |
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| T |
23378365 |
aactgtagcgatttatatggaggtttctaaaatcgattgattataacgtatgacctaccacatgtgtcagtatattgattgtgttcgtactccagaccta |
23378266 |
T |
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| Q |
209 |
cactataaccccatttggtcacttgaatttagggttttaaggtgatttaagagtgaggactgaaaaaatgtgcatgaggatttggtgactcttatgggtg |
308 |
Q |
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| T |
23378265 |
cactataagcccatttggtcacttgaatttagggttttgaggtgatttaagagcgaggactgaaaaaatgtgcatgaggatttggtgactcttatgggtg |
23378166 |
T |
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| Q |
309 |
aacataattggattgtgagat-gtttatgttcattgagaagtcaatcaatgtgcttaatgtcttgctactcttggttataatgaaagacttgattcgaca |
407 |
Q |
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| T |
23378165 |
aacataattggattgtgagatcaaacatattcattgagaagtcaatcaatgtgcttaatgtcttgttactcttggttataatgacagacttgattcgaca |
23378066 |
T |
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| Q |
408 |
aaactctcatccccaaccttctttattttttattacttcataatgattgtagaatgat |
465 |
Q |
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| T |
23378065 |
aaactctcatccccaaccttcttta-tttttattacttcataatgattgtagaatgat |
23378009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 23377549 - 23377482
Alignment:
| Q |
71 |
gcgtccatgaaattcatccgtaaaatggattgcgttaaaactgtagcgatttatatggaggtttctaa |
138 |
Q |
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| T |
23377549 |
gcgtccatgaaattcatctgtaaaatggattgcgttaaaattgcagtgattgataaggaggtttctaa |
23377482 |
T |
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