View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9401_low_27 (Length: 470)

Name: NF9401_low_27
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9401_low_27
NF9401_low_27
[»] chr7 (27 HSPs)
chr7 (234-460)||(33238346-33238572)
chr7 (234-460)||(33243523-33243749)
chr7 (265-460)||(47994144-47994339)
chr7 (265-460)||(47999319-47999514)
chr7 (234-385)||(21080317-21080468)
chr7 (265-385)||(2233979-2234099)
chr7 (234-385)||(19308872-19309023)
chr7 (234-385)||(42572600-42572751)
chr7 (265-385)||(17496100-17496220)
chr7 (265-385)||(17556994-17557114)
chr7 (234-385)||(12935084-12935235)
chr7 (233-385)||(32211960-32212112)
chr7 (234-385)||(47176492-47176643)
chr7 (234-385)||(43893542-43893693)
chr7 (265-378)||(16538700-16538813)
chr7 (265-378)||(16626849-16626962)
chr7 (234-317)||(47544745-47544828)
chr7 (396-460)||(2234384-2234448)
chr7 (396-460)||(12934674-12934738)
chr7 (396-460)||(19309365-19309429)
chr7 (396-460)||(21080793-21080857)
chr7 (396-460)||(42572222-42572286)
chr7 (396-460)||(43893146-43893210)
chr7 (396-460)||(16539166-16539230)
chr7 (396-460)||(16626432-16626496)
chr7 (408-460)||(32212419-32212471)
chr7 (396-460)||(47176904-47176968)
[»] chr6 (19 HSPs)
chr6 (234-460)||(22697768-22697994)
chr6 (234-460)||(22702944-22703170)
chr6 (234-457)||(21402035-21402258)
chr6 (233-408)||(29490807-29490982)
chr6 (234-385)||(2817397-2817548)
chr6 (234-385)||(34142781-34142932)
chr6 (234-385)||(34155397-34155548)
chr6 (234-385)||(6727773-6727924)
chr6 (234-385)||(34376464-34376615)
chr6 (234-385)||(24190650-24190802)
chr6 (234-385)||(31983475-31983626)
chr6 (396-460)||(31981840-31981904)
chr6 (396-460)||(34376206-34376270)
chr6 (396-460)||(24191126-24191190)
chr6 (396-460)||(24192223-24192287)
chr6 (396-458)||(6728193-6728255)
chr6 (408-460)||(34142366-34142418)
chr6 (408-460)||(34154982-34155034)
chr6 (425-460)||(29491005-29491040)
[»] chr5 (18 HSPs)
chr5 (234-460)||(17510349-17510575)
chr5 (234-460)||(42019864-42020090)
chr5 (234-460)||(42024644-42024870)
chr5 (265-460)||(17505244-17505439)
chr5 (265-460)||(43579951-43580146)
chr5 (265-460)||(41858877-41859070)
chr5 (265-374)||(41853846-41853955)
chr5 (265-385)||(1413100-1413220)
chr5 (265-385)||(36254517-36254637)
chr5 (233-385)||(24770600-24770752)
chr5 (234-361)||(26709712-26709839)
chr5 (234-361)||(26979446-26979573)
chr5 (303-385)||(24776124-24776206)
chr5 (396-460)||(1413806-1413870)
chr5 (396-460)||(24776563-24776627)
chr5 (396-459)||(36254114-36254177)
chr5 (396-457)||(26709383-26709444)
chr5 (396-457)||(26979117-26979178)
[»] chr4 (31 HSPs)
chr4 (234-460)||(8984983-8985209)
chr4 (234-460)||(13700801-13701027)
chr4 (234-460)||(21304531-21304757)
chr4 (234-460)||(54991767-54991993)
chr4 (234-460)||(8979863-8980089)
chr4 (234-460)||(21299411-21299637)
chr4 (234-460)||(39999413-39999638)
chr4 (234-460)||(40004371-40004596)
chr4 (234-460)||(54343547-54343772)
chr4 (234-460)||(54348701-54348926)
chr4 (234-459)||(54990388-54990613)
chr4 (265-460)||(36359672-36359867)
chr4 (234-460)||(36354486-36354710)
chr4 (38-234)||(8919181-8919377)
chr4 (63-231)||(8908906-8909078)
chr4 (265-385)||(53798329-53798449)
chr4 (234-385)||(41393858-41394009)
chr4 (285-385)||(51018753-51018853)
chr4 (234-385)||(9763269-9763420)
chr4 (234-385)||(13695757-13695908)
chr4 (234-385)||(13711370-13711521)
chr4 (305-385)||(4207042-4207122)
chr4 (318-385)||(47045700-47045767)
chr4 (396-460)||(13695439-13695503)
chr4 (396-460)||(9763771-9763835)
chr4 (396-460)||(41393520-41393584)
chr4 (396-460)||(53797906-53797970)
chr4 (386-460)||(51019117-51019191)
chr4 (396-460)||(13710946-13711010)
chr4 (396-460)||(47046060-47046124)
chr4 (85-141)||(8920055-8920111)
[»] chr1 (16 HSPs)
chr1 (234-460)||(27711614-27711840)
chr1 (265-460)||(34317841-34318036)
chr1 (265-460)||(36684271-36684466)
chr1 (265-460)||(37404027-37404222)
chr1 (265-460)||(37409146-37409341)
chr1 (265-460)||(11250732-11250927)
chr1 (265-460)||(27716734-27716929)
chr1 (234-385)||(5725365-5725516)
chr1 (228-385)||(5730771-5730928)
chr1 (234-385)||(3585301-3585452)
chr1 (265-385)||(48245999-48246119)
chr1 (265-323)||(50959011-50959069)
chr1 (396-460)||(5730382-5730446)
chr1 (386-460)||(48246427-48246501)
chr1 (396-460)||(3584878-3584942)
chr1 (347-380)||(50959091-50959124)
[»] scaffold0517 (1 HSPs)
scaffold0517 (265-460)||(3854-4049)
[»] chr2 (12 HSPs)
chr2 (234-460)||(40392610-40392836)
chr2 (265-460)||(42723007-42723202)
chr2 (265-460)||(42728176-42728371)
chr2 (234-458)||(44754132-44754355)
chr2 (233-460)||(44096646-44096872)
chr2 (234-458)||(44759298-44759521)
chr2 (267-459)||(40519925-40520122)
chr2 (265-459)||(40518076-40518275)
chr2 (232-385)||(4162889-4163042)
chr2 (265-385)||(28751048-28751168)
chr2 (396-460)||(4163331-4163395)
chr2 (396-457)||(28751483-28751544)
[»] scaffold0055 (1 HSPs)
scaffold0055 (265-460)||(3368-3563)
[»] scaffold0052 (1 HSPs)
scaffold0052 (265-460)||(80972-81167)
[»] chr8 (18 HSPs)
chr8 (265-460)||(32010870-32011065)
chr8 (265-460)||(32016044-32016239)
chr8 (234-459)||(2165390-2165616)
chr8 (234-385)||(43998542-43998693)
chr8 (234-385)||(17955130-17955281)
chr8 (265-385)||(24885324-24885444)
chr8 (234-385)||(42513844-42513995)
chr8 (323-385)||(21641211-21641273)
chr8 (386-460)||(24884990-24885064)
chr8 (396-460)||(21643835-21643899)
chr8 (396-457)||(21643020-21643081)
chr8 (396-457)||(21643395-21643456)
chr8 (404-460)||(42514182-42514238)
chr8 (396-457)||(21641520-21641581)
chr8 (396-457)||(21641895-21641956)
chr8 (396-457)||(21642270-21642331)
chr8 (396-457)||(21642645-21642706)
chr8 (396-460)||(43998984-43999048)
[»] chr3 (22 HSPs)
chr3 (234-460)||(15762556-15762781)
chr3 (234-460)||(15767717-15767942)
chr3 (234-460)||(20090187-20090413)
chr3 (234-460)||(20095312-20095538)
chr3 (265-460)||(55129081-55129275)
chr3 (232-460)||(17369010-17369238)
chr3 (234-385)||(3481645-3481796)
chr3 (265-385)||(34128438-34128558)
chr3 (265-385)||(17358566-17358685)
chr3 (265-385)||(30338127-30338247)
chr3 (234-385)||(30341200-30341351)
chr3 (269-385)||(54271312-54271428)
chr3 (233-385)||(4116945-4117097)
chr3 (303-385)||(3476257-3476339)
chr3 (396-460)||(17358115-17358179)
chr3 (396-460)||(54270922-54270986)
chr3 (396-457)||(4117345-4117406)
chr3 (396-460)||(3482166-3482230)
chr3 (396-460)||(30338506-30338570)
chr3 (396-460)||(34128923-34128987)
chr3 (396-460)||(3476699-3476763)
chr3 (396-458)||(10321722-10321784)
[»] scaffold0014 (2 HSPs)
scaffold0014 (265-460)||(31889-32084)
scaffold0014 (265-460)||(26717-26912)
[»] scaffold0594 (2 HSPs)
scaffold0594 (234-385)||(8530-8681)
scaffold0594 (396-459)||(8962-9025)
[»] scaffold0166 (4 HSPs)
scaffold0166 (233-385)||(12981-13133)
scaffold0166 (303-385)||(18508-18590)
scaffold0166 (396-460)||(13493-13557)
scaffold0166 (396-460)||(18946-19010)
[»] scaffold0060 (2 HSPs)
scaffold0060 (327-385)||(37654-37712)
scaffold0060 (386-460)||(37287-37361)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 33238572 - 33238346
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  33238572 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 33238473  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33238472 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 33238373  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  33238372 aaactgagaatcgaatactcttctctg 33238346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 33243749 - 33243523
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||    
T  33243749 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacacaaggatggagaaactagtgtaaag 33243650  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33243649 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 33243550  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  33243549 aaactgagaatcgaatactcttctctg 33243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 47994339 - 47994144
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994339 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 47994240  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47994239 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 47994144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 47999514 - 47999319
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47999514 ttggagtatattagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtctcacatcgg 47999415  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47999414 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 47999319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 21080317 - 21080468
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21080317 tgttggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21080416  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  21080417 tgtgaattgaaaattttatgtcccacgttgggtagatcacacactctagtag 21080468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 2233979 - 2234099
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  2233979 ttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 2234078  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  2234079 gtagatcacacactctagtag 2234099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 19308872 - 19309023
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  19308872 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 19308971  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19308972 tgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 19309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 42572751 - 42572600
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  42572751 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 42572652  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42572651 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 42572600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 17496220 - 17496100
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  17496220 ttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17496121  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  17496120 gtagatcacacactctagtag 17496100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 17556994 - 17557114
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  17556994 ttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17557093  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  17557094 gtagatcacacactctagtag 17557114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 12935235 - 12935084
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  12935235 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttgaaatgtaaacacaaggatgtagaaactagtgtaaag 12935136  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  12935135 tgtgaattgaaaattttatgtcccacattgggtagatcacacactttagtag 12935084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 32211960 - 32212112
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | ||| ||| ||||| ||| ||||||||||||||||||||||||||||||    
T  32211960 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgttgagactttggaatgtaaacacaaggatggagaaactagtgtaaa 32212059  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  32212060 gtgtgaattgaaaattttatgtctcacattgggtagatcacacactctagtag 32212112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 47176492 - 47176643
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  47176492 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 47176591  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  47176592 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 47176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 43893693 - 43893542
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||| ||||||    
T  43893693 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagcgtaaag 43893594  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  43893593 tgtgaattgaaaattttatgtccctcattgggtagatcacacactctagtag 43893542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 16538700 - 16538813
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |     
T  16538700 ttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattga 16538799  T
Q  365 atagatcacacact 378  Q
     |||||||||||||    
T  16538800 gtagatcacacact 16538813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 16626962 - 16626849
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |     
T  16626962 ttggagtatactagttgttatgtggagactttggaatgtagacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccatattga 16626863  T
Q  365 atagatcacacact 378  Q
     |||||||||||||    
T  16626862 gtagatcacacact 16626849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 47544745 - 47544828
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatgg 317  Q
    |||||||||||||||||||||||        |||||||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  47544745 tgttggaacactagtgtataatgaaaaaaacttggagtatactagagagtttgtggagcctttggaatgtaaacacaaggatgg 47544828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 2234384 - 2234448
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||    
T  2234384 tataaatagagagctcgggattagtattcttcactccaaaaccgagaatcgaatcctcttctctg 2234448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 12934738 - 12934674
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  12934738 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 12934674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 19309365 - 19309429
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||| ||| ||||||||||    
T  19309365 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctg 19309429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 21080793 - 21080857
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | | |||||||||| |||||||||||||||||| ||||||||||    
T  21080793 tataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctg 21080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 42572286 - 42572222
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  42572286 tataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 42572222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 43893210 - 43893146
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||  ||||||||||| ||||||||||    
T  43893210 tataaatagagagctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctg 43893146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 16539166 - 16539230
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||  ||| ||||||||||    
T  16539166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctg 16539230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 16626496 - 16626432
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||  ||| ||||||||||    
T  16626496 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctg 16626432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 32212419 - 32212471
Alignment:
Q  408 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 32212471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 47176904 - 47176968
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| |||   ||||||||||||||||| || |||||||| ||||||||||    
T  47176904 tataaatagagagctcgggaatgagattcttcactccaaaaccgataatcgaatcctcttctctg 47176968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 22697768 - 22697994
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22697768 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 22697867  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22697868 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 22697967  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  22697968 aaactgagaatcgaatactcttctctg 22697994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 22702944 - 22703170
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22702944 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 22703043  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22703044 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 22703143  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  22703144 aaactgagaatcgaatactcttctctg 22703170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 234 - 457
Target Start/End: Complemental strand, 21402258 - 21402035
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21402258 tgttggaacactagtgtataatgaaaaaaacttggagtatagtagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21402159  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |    
T  21402158 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagcttgggaatagtattcatcactcaa 21402059  T
Q  434 aaactgagaatcgaatactcttct 457  Q
    ||||| ||||||||||||||||||    
T  21402058 aaactaagaatcgaatactcttct 21402035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 233 - 408
Target Start/End: Original strand, 29490807 - 29490982
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  29490807 gtgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcttttggaatgtaaacacaaggatggagaaactagtgtaaa 29490906  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagag 408  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29490907 gtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagag 29490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 2817397 - 2817548
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2817397 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 2817496  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  2817497 tgtgaattgaaaatttaatgtcccacattgggtagatcacacactctagtag 2817548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 34142932 - 34142781
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  34142932 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 34142833  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34142832 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 34142781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 34155548 - 34155397
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  34155548 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 34155449  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34155448 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 34155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 6727773 - 6727924
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  6727773 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 6727872  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  6727873 tgtgaattgaaaattttatgttccacattgggtagatcacacactctagtag 6727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 34376615 - 34376464
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  34376615 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 34376516  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  34376515 tgtgaattgaaaattttatgtcccacattgggtagataacacactctagtag 34376464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 24190650 - 24190802
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  24190650 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 24190749  T
Q  334 tgtgaattgaaaa-ttttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  24190750 tgtgaattgaaaatttttatgtcccacattgggtagatcacacactctagtag 24190802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 31983626 - 31983475
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||| ||||||||||    
T  31983626 tgttggaacactagtgtatattggcaaaaacttggagtatactagtttttatgaggagacattggaatgtaaacacaatgatgtagaaattagtgtaaag 31983527  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  31983526 tgtgaattgaaaattttatgtcccgcattgggtagatcacacactctagtag 31983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 31981904 - 31981840
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||    
T  31981904 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttctctg 31981840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 34376270 - 34376206
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  34376270 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 34376206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 24191126 - 24191190
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||    
T  24191126 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctg 24191190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 24192223 - 24192287
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||    
T  24192223 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctg 24192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 458
Target Start/End: Original strand, 6728193 - 6728255
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctc 458  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| | ||||||    
T  6728193 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatccccttctc 6728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 34142418 - 34142366
Alignment:
Q  408 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  34142418 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctg 34142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 34155034 - 34154982
Alignment:
Q  408 gctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    |||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  34155034 gctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctg 34154982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 29491005 - 29491040
Alignment:
Q  425 ttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29491005 ttcactccaaaactgagaatcaaatactcttctctg 29491040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 17510575 - 17510349
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17510575 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 17510476  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17510475 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 17510376  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  17510375 aaactgagaatcgaatactcttctctg 17510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 42020090 - 42019864
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||     
T  42020090 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactaatgtaaaa 42019991  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42019990 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 42019891  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  42019890 aaactgagaatcgaatactcttctctg 42019864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 42024870 - 42024644
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||     
T  42024870 tgttggaacactagtgtataatgaaaaaaacttgaagtatactagtgagtttgtggagcctttggaatgtaaacataaggatggagaaactagtgtaaaa 42024771  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42024770 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 42024671  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    ||| |||||||||||||||||||||||    
T  42024670 aaattgagaatcgaatactcttctctg 42024644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 17505439 - 17505244
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  17505439 ttggaatatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaactattgtaaagtgtgaattgaaaattttatgtcccacatcgg 17505340  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17505339 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 17505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 43580146 - 43579951
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580146 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 43580047  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  43580046 gtagatcacatactctagtagaaatcctccttataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctg 43579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 41859070 - 41858877
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  41859070 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggaaaaattagtgtaaagtgtgaattgaaaattctatgtcccacatcgg 41858971  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||  ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41858970 gtagat--cacactctagtagaaattctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 41858877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 41853955 - 41853846
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41853955 ttggagtatactagggagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattctatgtcccacatcgg 41853856  T
Q  365 atagatcaca 374  Q
     |||||||||    
T  41853855 gtagatcaca 41853846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 1413100 - 1413220
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |     
T  1413100 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattga 1413199  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  1413200 gtagatcacacactctagtag 1413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 36254637 - 36254517
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||    
T  36254637 ttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgttccacattgg 36254538  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  36254537 gtagatcacacactctagtag 36254517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 24770600 - 24770752
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| |||||||||||||||    
T  24770600 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaa 24770699  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  24770700 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24770752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 26709839 - 26709712
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||| ||||||||||||        ||| |||||||||||  ||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26709839 tgttggaacattagtgtataatggaaaaaatttgaagtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaag 26709740  T
Q  334 tgtgaattgaaaattttatgtcccacat 361  Q
    ||||||||||||||||||||||||||||    
T  26709739 tgtgaattgaaaattttatgtcccacat 26709712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 361
Target Start/End: Complemental strand, 26979573 - 26979446
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||| ||||||||||||        ||| |||||||||||  ||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26979573 tgttggaacattagtgtataatggaaaaaatttgaagtatactagttggtttgtggagcctatggaatgtaaacacaagaatggagaaactagtgtaaag 26979474  T
Q  334 tgtgaattgaaaattttatgtcccacat 361  Q
    ||||||||||||||||||||||||||||    
T  26979473 tgtgaattgaaaattttatgtcccacat 26979446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 24776124 - 24776206
Alignment:
Q  303 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  24776124 taaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 24776206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 1413806 - 1413870
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| ||||    
T  1413806 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctg 1413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 24776563 - 24776627
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||| | | | |||||||| |||||||||| ||||||||||||||||||||||    
T  24776563 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctg 24776627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 36254177 - 36254114
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 459  Q
    ||||||| ||||||| || ||| | ||||||||||||||||| ||||||||||| |||||||||    
T  36254177 tataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctct 36254114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 26709444 - 26709383
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||||||||| | | | |||||||||||||||||||||||| |||| |||||||    
T  26709444 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttct 26709383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 26979178 - 26979117
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||||||||| | | | |||||||||||||||||||||||| |||| |||||||    
T  26979178 tataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttct 26979117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 8984983 - 8985209
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8984983 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8985082  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8985083 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 8985182  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  8985183 aaactgagaatcgaatactcttctctg 8985209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 13701027 - 13700801
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  13701027 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 13700928  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13700927 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 13700828  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  13700827 aaactgagaatcgaatactcttctctg 13700801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 21304531 - 21304757
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21304531 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 21304630  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21304631 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 21304730  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  21304731 aaactgagaatcgaatactcttctctg 21304757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 54991993 - 54991767
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  54991993 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 54991894  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||    
T  54991893 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgaaagctcgggaatagtattcttcacttca 54991794  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  54991793 aaactgagaatcgaatactcttctctg 54991767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 8979863 - 8980089
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8979863 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8979962  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8979963 tgtgaattgaaaattttatgtcccatatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgagaatagtattcttcactcca 8980062  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  8980063 aaactgagaatcgaatactcttctctg 8980089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 21299411 - 21299637
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  21299411 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatgaagaaactagtgtaaag 21299510  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  21299511 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactcca 21299610  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  21299611 aaactgagaatcgaatactcttctctg 21299637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 39999638 - 39999413
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  39999638 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 39999540  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39999539 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 39999440  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  39999439 aaactgagaatcgaatactcttctctg 39999413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 40004596 - 40004371
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  40004596 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 40004498  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40004497 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 40004398  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  40004397 aaactgagaatcgaatactcttctctg 40004371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 54343772 - 54343547
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  54343772 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 54343674  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54343673 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 54343574  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  54343573 aaactgagaatcgaatactcttctctg 54343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 54348926 - 54348701
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  54348926 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 54348828  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54348827 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 54348728  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  54348727 aaactgagaatcgaatactcttctctg 54348701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 234 - 459
Target Start/End: Original strand, 54990388 - 54990613
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    ||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  54990388 tgttggaacactaatgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaag 54990487  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  54990488 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaattctccttataaattgagagctcgggtatagtattcttcactcca 54990587  T
Q  434 aaactgagaatcgaatactcttctct 459  Q
    |||||||||||| |||||||||||||    
T  54990588 aaactgagaatcaaatactcttctct 54990613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 36359867 - 36359672
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359867 ttggagtatactagtgagtttgtggagcctttgaaatgttaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 36359768  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  36359767 gtagatcacacactctagtagaaattctccttataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctg 36359672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 36354710 - 36354486
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  36354710 tgttggaacactagtgtataatgaaaaac--ttggagtatactagtgaatttgtggagcctttggaatgttaacacaaggatggagaaactagtgtaaag 36354613  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||    
T  36354612 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctctttataaattgagagctcagaaatagtattctttactcca 36354513  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  36354512 aaactgagaatcgaatactcttctctg 36354486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 8919377 - 8919181
Alignment:
Q  38 aagaagaagcggtagtannnnnnnctgtttgtgtttgcatgcattctaattcggtgttgcctatttctttttcattttaatttttaaagaaaattaagaa 137  Q
    |||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  8919377 aagaagaagcggtagtatttttttctgttggtgtttgcatgcattctaattcggtgttgcctatttctttttccttttattttttaaagaaaattaagaa 8919278  T
Q  138 gttatagtgtacaggcaaaactaaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaagtgt 234  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8919277 gttatagtgtacaggcacaactaaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaagtgt 8919181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 8909078 - 8908906
Alignment:
Q  63 tgtttgtgtttgcatgcattctaattcggtgttgcctatttctttttcatttta----atttttaaagaaaattaagaagttatagtgtacaggcaaaac 158  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||| ||  | ||| |  ||    
T  8909078 tgttggtgtttgcatgcattctaattcggtgttgcctgtttctttttcattttactttatttttaaagaaaattaagaagttatcgtacataggaaccac 8908979  T
Q  159 taaatcacatgtcatttttaacattataatgtctaaattaaaatgagtataggaaacataaatcttgataaag 231  Q
    |||||||||| | | ||||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  8908978 taaatcacatataacttttaccattataatgtctacattaaaatgaatataggaaacataagtcttgataaag 8908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 53798449 - 53798329
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  53798449 ttggagtatactagttggtttgtggagcctttggaatgtaaacacaagaatggagaaactagtgtaaagtgtgaattgaaaattttatgtcctacattgg 53798350  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  53798349 gtagatcacacactctagtag 53798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 41394009 - 41393858
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | |||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  41394009 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtgaagcctttggaatgtaaacacaaggatggaaaaactagtgtaaag 41393910  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  41393909 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 41393858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 385
Target Start/End: Original strand, 51018753 - 51018853
Alignment:
Q  285 tgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagta 384  Q
    ||||||| ||||| ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  51018753 tgtggagactttggaatgtacacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagta 51018852  T
Q  385 g 385  Q
    |    
T  51018853 g 51018853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 9763269 - 9763420
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  9763269 tgttggaacactagtgtatattggcataaacttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaag 9763368  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
      |||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  9763369 catgaattgaaaattttatgtcccacattgagtagatcacacactctagtag 9763420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 13695908 - 13695757
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  13695908 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 13695809  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13695808 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 13711521 - 13711370
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| ||||||||||||||||    
T  13711521 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaag 13711422  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13711421 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 4207122 - 4207042
Alignment:
Q  305 aacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4207122 aacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4207042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 47045700 - 47045767
Alignment:
Q  318 agaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47045700 agaaactagtgtaaagtgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 47045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 13695503 - 13695439
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||    
T  13695503 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctg 13695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 9763771 - 9763835
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | ||||||||||||||||||| ||||||||||| ||||||||||    
T  9763771 tataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctg 9763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 41393584 - 41393520
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  41393584 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 41393520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 53797970 - 53797906
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | ||| ||||||||||||||||| ||||||||||| ||||||||||    
T  53797970 tataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctg 53797906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 460
Target Start/End: Original strand, 51019117 - 51019191
Alignment:
Q  386 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||||  ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  51019117 aaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 51019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 13711010 - 13710946
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||    
T  13711010 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctg 13710946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 47046060 - 47046124
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||  |||||||||    
T  47046060 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctg 47046124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 8920111 - 8920055
Alignment:
Q  85 aattcggtgttgcctatttctttttcattttaatttttaaagaaaattaagaagtta 141  Q
    |||| |||||||||| ||||||||| ||||||  |||| ||| ||||||||||||||    
T  8920111 aattaggtgttgcctgtttcttttttattttatgtttttaagtaaattaagaagtta 8920055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 27711840 - 27711614
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  27711840 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 27711741  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27711740 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 27711641  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  27711640 aaactgagaatcgaatactcttctctg 27711614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 34317841 - 34318036
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317841 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 34317940  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34317941 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 34318036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 36684271 - 36684466
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684271 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 36684370  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  36684371 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctg 36684466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 37404027 - 37404222
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404027 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 37404126  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37404127 gtagatcacacactctagtagaaatcctccttataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 37404222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 37409146 - 37409341
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409146 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 37409245  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37409246 gtagatcacacactctagtataaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 37409341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 11250732 - 11250927
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11250732 ttggagtataccagtgagtttgtggagtctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 11250831  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||||||||    
T  11250832 ttagatcacacactctagtagaaatcctccttataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctg 11250927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 27716929 - 27716734
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27716929 ttggagtatactagtgagtttgtggagcctttggaacgtaagcacaaggatggagaaactagtgtaaagtgtgaattgaaatttttatgtcccacatcgg 27716830  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  27716829 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctg 27716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 5725516 - 5725365
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5725516 tgttggaacactagtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 5725417  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  5725416 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 5725365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 5730928 - 5730771
Alignment:
Q  228 aaagtgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagt 327  Q
    |||||||||| ||||||||||||||||||        |||||||||||||||  ||||||| | |||||| ||| |||||||||||||||||||||||||    
T  5730928 aaagtgtgttagaacactagtgtataatggaaaaaatttggagtatactagttggtttgtgaaacctttggaatgtaaacacaaggatggagaaactagt 5730829  T
Q  328 gtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  5730828 gtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 5730771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 3585452 - 3585301
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||     
T  3585452 tgttggaacactagtgtatattggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaaa 3585353  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3585352 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 48245999 - 48246119
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  48245999 ttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattaaaatttttatgtcccacattgg 48246098  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  48246099 gtagatcacacactctagtag 48246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 50959011 - 50959069
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaac 323  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  50959011 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaagaatggagaaac 50959069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 5730446 - 5730382
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||    
T  5730446 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctg 5730382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 460
Target Start/End: Original strand, 48246427 - 48246501
Alignment:
Q  386 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||||  ||||||| |||| ||||| ||| | |||||||||| |||||| ||||||||||| ||||||||||    
T  48246427 aaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatcctcttctctg 48246501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 3584942 - 3584878
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||| | | | | ||||||||||||||||| ||||||||||| ||||||||||    
T  3584942 tataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctg 3584878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 50959091 - 50959124
Alignment:
Q  347 ttttatgtcccacatcggatagatcacacactct 380  Q
    ||||||||||||||||||||||||||| ||||||    
T  50959091 ttttatgtcccacatcggatagatcacgcactct 50959124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 4049 - 3854
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4049 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 3950  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3949 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 3854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 234 - 460
Target Start/End: Complemental strand, 40392836 - 40392610
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  40392836 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttgcaatgtaaacataaggatggagaaactagtgtaaag 40392737  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40392736 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 40392637  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    ||||||||||||||||||| |||||||    
T  40392636 aaactgagaatcgaatacttttctctg 40392610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 42723007 - 42723202
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723007 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42723106  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42723107 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 42723202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 42728176 - 42728371
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728176 ttggagtttactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 42728275  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42728276 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 42728371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 234 - 458
Target Start/End: Original strand, 44754132 - 44754355
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  44754132 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 44754230  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44754231 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 44754330  T
Q  434 aaactgagaatcgaatactcttctc 458  Q
    |||||||||||||||||||||||||    
T  44754331 aaactgagaatcgaatactcttctc 44754355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 233 - 460
Target Start/End: Complemental strand, 44096872 - 44096646
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||    
T  44096872 gtgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcatttggaatgtaaacaaaaggatggagaaactagtgtaaa 44096774  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcc 432  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  44096773 gtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattctttactcc 44096674  T
Q  433 aaaactgagaatcgaatactcttctctg 460  Q
    ||||||||||||||||||||||||||||    
T  44096673 aaaactgagaatcgaatactcttctctg 44096646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 234 - 458
Target Start/End: Original strand, 44759298 - 44759521
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||| ||||||||||    
T  44759298 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaattagtgtaaag 44759396  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44759397 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 44759496  T
Q  434 aaactgagaatcgaatactcttctc 458  Q
    |||||||||||||||||||||||||    
T  44759497 aaactgagaatcgaatactcttctc 44759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 267 - 459
Target Start/End: Complemental strand, 40520122 - 40519925
Alignment:
Q  267 ggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc-gga 365  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  40520122 ggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgggg 40520023  T
Q  366 tagatcacacactctagtagaaatcctcctt----ataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 459  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40520022 tagatcacacactctagtagaaatcctccttatgaataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 265 - 459
Target Start/End: Original strand, 40518076 - 40518275
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatc-g 363  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40518076 ttggagtataatagtgagtttgtggagcctttggaatataaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 40518175  T
Q  364 gatagatcacacactctagtagaaatcctcctt----ataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 459  Q
    | |||||||||||||||||||||||||||||||    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  40518176 ggtagatcacacactctagtagaaatcctccttattaataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctct 40518275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 4162889 - 4163042
Alignment:
Q  232 tgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaa 331  Q
    |||||||||||||| ||||||||||        |||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4162889 tgtgttggaacactggtgtataatggaaaaaacttggagtatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaa 4162988  T
Q  332 agtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4162989 agtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4163042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 28751048 - 28751168
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28751048 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 28751147  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  28751148 gtagatcacacactctagtag 28751168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 4163331 - 4163395
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||    
T  4163331 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctg 4163395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 28751483 - 28751544
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||||||||| |||   ||||||||||||||||| ||||||||||| |||||||    
T  28751483 tataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttct 28751544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 3563 - 3368
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3563 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatccg 3464  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3463 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 3368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Original strand, 80972 - 81167
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  80972 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatccg 81071  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  81072 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 81167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 32011065 - 32010870
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32011065 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 32010966  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32010965 gtagatcatacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 32010870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 32016239 - 32016044
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32016239 ttggagtatactagtgaatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 32016140  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32016139 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 32016044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 234 - 459
Target Start/End: Original strand, 2165390 - 2165616
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttga-aatttaaacacaaggatggagaaactagtgtaaa 332  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||    
T  2165390 tgttggaacactagtgtataatgaaaaaattttggagtatactagtgagtttgtggagtctttgggaatgtaaacacaaggatggagaaactagtgtaaa 2165489  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcc 432  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2165490 gtgtgaattgaaaattttatgtctcacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcc 2165589  T
Q  433 aaaactgagaatcgaatactcttctct 459  Q
    |||| |||||||| ||| |||||||||    
T  2165590 aaaattgagaatcaaatgctcttctct 2165616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 43998542 - 43998693
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43998542 tgttggaacactagtgtataatgaaaaaaacttggagtatactagttggtttgtggagcctttgaaatgtaaacacaaggatggagaaactagtgtaaag 43998641  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  43998642 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 43998693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 17955130 - 17955281
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        || ||||||||||||   ||||||||||||||| ||| ||||||||||||||||||||||||||| |||    
T  17955130 tgttggaacactagtgtataatggaaaagacttagagtatactagttgttttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtgaag 17955229  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  17955230 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 17955281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 24885444 - 24885324
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  24885444 ttggagtatactagttgttatgtggagactttggaatgtaaacacaaggatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 24885345  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  24885344 gtagatcacacactctagtag 24885324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 42513844 - 42513995
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||| | ||| ||| |||||||||||||| ||||| ||||||||||    
T  42513844 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagacattggaatgtaaacacaaggatgtagaaaatagtgtaaag 42513943  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42513944 tgtgaattgaaaattttatgtcccacattggatagatcacacactctagtag 42513995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 21641211 - 21641273
Alignment:
Q  323 ctagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  21641211 ctagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 21641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 24885064 - 24884990
Alignment:
Q  386 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||||  ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  24885064 aaatcctctctataaatagagagctcgggaatggaattcttcactccaaaaccgagaatcgaatcctcttctctg 24884990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 21643835 - 21643899
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  21643835 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 21643899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21643020 - 21643081
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| |||||||    
T  21643020 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 21643081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21643395 - 21643456
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||| ||||||||||| |||||||    
T  21643395 tataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 21643456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 42514182 - 42514238
Alignment:
Q  404 gagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    |||||||||| |||   ||||||||||||||||| ||||||||||| ||||||||||    
T  42514182 gagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctg 42514238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21641520 - 21641581
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| |||||||    
T  21641520 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttct 21641581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21641895 - 21641956
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| |||||||    
T  21641895 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttct 21641956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21642270 - 21642331
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| |||||||    
T  21642270 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttct 21642331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 21642645 - 21642706
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||| ||||| ||| | ||||||||||||||||  ||||||||||| |||||||    
T  21642645 tataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttct 21642706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 43998984 - 43999048
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | |   |||||| |||| ||||||||||||||||| ||||||||||    
T  43998984 tataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctg 43999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 15762556 - 15762781
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  15762556 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 15762654  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15762655 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 15762754  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  15762755 aaactgagaatcgaatactcttctctg 15762781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 15767717 - 15767942
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  15767717 tgttggaacactagtgtataatgaaaaaac-ttggagtatactagtgagtttgtggagcctttggcatgtaaacataaggatggagaaactagtgtaaag 15767815  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15767816 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 15767915  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  15767916 aaactgagaatcgaatactcttctctg 15767942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 20090187 - 20090413
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  20090187 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaag 20090286  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20090287 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 20090386  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  20090387 aaactgagaatcgaatactcttctctg 20090413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 460
Target Start/End: Original strand, 20095312 - 20095538
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  20095312 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggcatgtaaacatcaggatggagaaactagtgtaaag 20095411  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactcca 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20095412 tgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactcca 20095511  T
Q  434 aaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||    
T  20095512 aaactgagaatcgaatactcttctctg 20095538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 55129275 - 55129081
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129275 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaag-atggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 55129177  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55129176 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctg 55129081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 232 - 460
Target Start/End: Complemental strand, 17369238 - 17369010
Alignment:
Q  232 tgtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaa 331  Q
    ||||||||||||||||| |||||||        || || |||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17369238 tgtgttggaacactagtatataatggaaaaaacttcgattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaa 17369139  T
Q  332 agtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactc 431  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17369138 agtgtgaattgaaaattttatgtcccacatcgggtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcactc 17369039  T
Q  432 caaaactgagaatcgaatactcttctctg 460  Q
    |||||||||||||||||||||||||||||    
T  17369038 caaaactgagaatcgaatactcttctctg 17369010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 3481645 - 3481796
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3481645 tgttggaacactagtgtataatgaaaaaaacttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 3481744  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3481745 tgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 34128438 - 34128558
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34128438 ttggagtatactagttgatttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgg 34128537  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  34128538 gtagatcacacactctagtag 34128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 17358685 - 17358566
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||| |||||||||  |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  17358685 ttggattatactagttggtttgtggagcctttggaatgtaaacacaaggatggagaaa-tagtgtaaagtgtgaattgaaaattttatgtcccacattgg 17358587  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  17358586 gtagatcacacactctagtag 17358566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 30338127 - 30338247
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  30338127 ttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaattagtgtaaagtgtgaattgaaaattttatgtcccacattgg 30338226  T
Q  365 atagatcacacactctagtag 385  Q
     ||||||||||||||||||||    
T  30338227 gtagatcacacactctagtag 30338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 30341200 - 30341351
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  30341200 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 30341299  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||||||||||||||| |||||||  | ||||||||||||||||||||    
T  30341300 tgtgaattgaaaattttatggcccacattaggtagatcacacactctagtag 30341351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 269 - 385
Target Start/End: Complemental strand, 54271428 - 54271312
Alignment:
Q  269 agtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatag 368  Q
    |||||||||||   | ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||    
T  54271428 agtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtctaaagtgtgaattgaaaattttatgtcccacattgggtag 54271329  T
Q  369 atcacacactctagtag 385  Q
    |||||||||||||||||    
T  54271328 atcacacactctagtag 54271312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 4116945 - 4117097
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||  | ||| ||| ||||||||| |||| |||||||||||||||    
T  4116945 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggaaacattggaatgtaaacacaatgatgaagaaactagtgtaaa 4117044  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  4117045 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 4117097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 3476257 - 3476339
Alignment:
Q  303 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3476257 taaacacaatgatgtagaaactagtgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 3476339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 17358179 - 17358115
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||    
T  17358179 tataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctg 17358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 460
Target Start/End: Complemental strand, 54270986 - 54270922
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  54270986 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctg 54270922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 4117345 - 4117406
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttct 457  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| |||||||    
T  4117345 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 4117406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 3482166 - 3482230
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||| ||||| ||||    
T  3482166 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctg 3482230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 30338506 - 30338570
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| | | | ||||||||||||||||| ||||||||||| ||||||||||    
T  30338506 tataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttctctg 30338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 34128923 - 34128987
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| ||||| |||| | | | ||||||||||||||||||||||||||||| ||||||||||    
T  34128923 tataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctg 34128987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 3476699 - 3476763
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | ||||||||||||||||   |||||||||| ||||||||||    
T  3476699 tataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctg 3476763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 10321784 - 10321722
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctc 458  Q
    ||||||| |||||||||| | | | ||||||||||||||||| |||||| |||| ||||||||    
T  10321784 tataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctc 10321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 32084 - 31889
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32084 ttggagtatactagtgagtttgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 31985  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  31984 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctg 31889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 265 - 460
Target Start/End: Complemental strand, 26912 - 26717
Alignment:
Q  265 ttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 364  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26912 ttggagtatactagtgagtttgtggagcctttggaatgtaaacaaaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcgg 26813  T
Q  365 atagatcacacactctagtagaaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  26812 gtagatcacacactctagtagaaatcctccttataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctg 26717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 234 - 385
Target Start/End: Original strand, 8530 - 8681
Alignment:
Q  234 tgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaag 333  Q
    |||||||||||||||||||| ||        |||||||||||||||   | ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8530 tgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgtggagcctttggaatgtaaacacaaggatggagaaactagtgtaaag 8629  T
Q  334 tgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  8630 tgtgaatttaaaattttatgtcccacattgggtagatcacacactctagtag 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 459
Target Start/End: Original strand, 8962 - 9025
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctct 459  Q
    ||||||| |||||||||| ||| | ||||||||||||||||  ||||||||||| |||||||||    
T  8962 tataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctct 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 12981 - 13133
Alignment:
Q  233 gtgttggaacactagtgtataatgnnnnnnngttggagtatactagtgagtttgtggagcctttgaaatttaaacacaaggatggagaaactagtgtaaa 332  Q
    ||||||||||||||||||||| ||        |||||||||||||||   | || |||| | ||| ||| ||||||||| |||| |||||||||||||||    
T  12981 gtgttggaacactagtgtatattggcaaaaacttggagtatactagttgttatgaggagacattggaatgtaaacacaatgatgtagaaactagtgtaaa 13080  T
Q  333 gtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  13081 gtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 18508 - 18590
Alignment:
Q  303 taaacacaaggatggagaaactagtgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  18508 taaacacaatgatgtagaaactagtataaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactctagtag 18590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 13493 - 13557
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||    
T  13493 tataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctg 13557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 18946 - 19010
Alignment:
Q  396 tataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||| |||||||| | | | |||||||| |||||||||| ||||||||||||||||||||||    
T  18946 tataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctg 19010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 37712 - 37654
Alignment:
Q  327 tgtaaagtgtgaattgaaaattttatgtcccacatcggatagatcacacactctagtag 385  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  37712 tgtaaagtgtgaattgaaaattttatgtcccacattgggtagatcacacactccagtag 37654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 460
Target Start/End: Complemental strand, 37361 - 37287
Alignment:
Q  386 aaatcctccttataaattgagagctcggcaatagtattcttcactccaaaactgagaatcgaatactcttctctg 460  Q
    ||||||||  ||||||| |||||||||| |||   ||||||||||||||||| ||||||||||| ||||||||||    
T  37361 aaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctg 37287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University