View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_30 (Length: 461)
Name: NF9401_low_30
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 83 - 443
Target Start/End: Original strand, 10071228 - 10071591
Alignment:
| Q |
83 |
tttacaattatgcgatcccacgtgatacgtgtgatatctttttctgctttaaagaaggaaattaacgatccttcgagatcatataacagctaaaatttat |
182 |
Q |
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| T |
10071228 |
tttacaattatgcgatcccacgtgatacgtgtgatatctttttctgctttaaagaaggaaattaacgatccttcgagatcatataacagctaaaatttat |
10071327 |
T |
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| Q |
183 |
aattaaaaaggtaaagttgctnnnnnnnnnnctaaaactactcaatgttttttgttgttgatggaaaggaatgaaattaataataaacgaggggactata |
282 |
Q |
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| T |
10071328 |
aattaaaaaggtaaagtttct-aaaaaaaaactaaaactactcaatgttttttgttgttgatggaaaggaatgaaattaataataaacgaggggactata |
10071426 |
T |
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| Q |
283 |
agagtgacacaatctttc---nnnnnnnnnngagagtgacacaatgagcgaaatgcatagaacctgat-aaagggcacaacctctctaaaatattcaaag |
378 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
10071427 |
agagtgacacaatctttcaaaacaaaaaaaacagagtgacacaatgagcaaaatgcatagaacctaataaaagggcacaacctctctaaaatattcaaag |
10071526 |
T |
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| Q |
379 |
acaaagagacttgtgttccaaggaagctaagaaatcagcacacttgttaacatcatgagcgatat |
443 |
Q |
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| T |
10071527 |
acaaagagacttgtgttccaaggaagctaagaaatcagcaaacttgttaacatcatgagcgatat |
10071591 |
T |
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