View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_31 (Length: 453)
Name: NF9401_low_31
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_31 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 30951819 - 30951399
Alignment:
| Q |
18 |
gttagcatattcaaggatgacatattagaaaatagaaattatatttgaacactatgatcagaatatttccaacaaaagtgttatgttaccatcatcacca |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951819 |
gttagcatattcagggatgacatattagaaaatagaaattatatttgaacactatgatcagaatatttccaacaaaagtgttatgttaccatcatcacca |
30951720 |
T |
|
| Q |
118 |
caaactttttggtaggacttatccttgcagaaacatatgaacttataattatcaaatccacatcttccaccacttttctcacaatgctgacaatcaggtg |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951719 |
caaacttttaggtaggacttatccttgcagaaacatatgaacttataattatcaaatccacatcttccaccacttttctcacaatgctgacaatcaggtg |
30951620 |
T |
|
| Q |
218 |
cagtccaattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaacactagtattcatcaccaatggagcatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951619 |
cagtccaattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaacactagtattcatcaccaatggagcatt |
30951520 |
T |
|
| Q |
318 |
aaccataaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaagaatagtgtgtagcattttctgcacattct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30951519 |
aaccataaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaagaatagtgtgtagcattttctgcacattct |
30951420 |
T |
|
| Q |
418 |
acttcataggtaaggtgatgt |
438 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
30951419 |
acttcataggtaaggtaatgt |
30951399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 90 - 425
Target Start/End: Complemental strand, 31016082 - 31015747
Alignment:
| Q |
90 |
caaaagtgttatgttaccatcatcaccacaaactttttggtaggacttatccttgcagaaacatatgaacttataattatcaaatccacatcttccacca |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31016082 |
caaaagtgttatgttaccatcatcaccacaaactttttggtaggacttatccttgcagaaacatatgaacttgtaattatcaaatccacatcttccacca |
31015983 |
T |
|
| Q |
190 |
cttttctcacaatgctgacaatcaggtgcagtccaattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||| ||||||||||||||||||||| |
|
|
| T |
31015982 |
cttttctcacaatgctgacaatcaggtgcagtccaattcaaaaccgaccccattttcaaaacgtcgatataattcattttcaacaagctagtgaaattaa |
31015883 |
T |
|
| Q |
290 |
cactagtattcatcaccaatggagcattaaccataaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaaga |
389 |
Q |
| |
|
|| |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
31015882 |
cattagtgttcaaaaccaatggagcattaaccataaactgacattcattcaaggaatagtttttgtgctcaagtgcttccttatgaaaaacagcaaaaga |
31015783 |
T |
|
| Q |
390 |
atagtgtgtagcattttctgcacattctacttcata |
425 |
Q |
| |
|
||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
31015782 |
ataatgtgtagcatttgttgcacattctatttcata |
31015747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University