View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9401_low_39 (Length: 407)

Name: NF9401_low_39
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9401_low_39
NF9401_low_39
[»] chr8 (3 HSPs)
chr8 (160-332)||(20100432-20100604)
chr8 (353-389)||(20100603-20100639)
chr8 (148-199)||(20097005-20097056)
[»] chr4 (3 HSPs)
chr4 (83-128)||(17062554-17062599)
chr4 (1-59)||(21347416-21347474)
chr4 (4-59)||(17062475-17062530)
[»] chr5 (2 HSPs)
chr5 (1-47)||(14721684-14721730)
chr5 (83-123)||(30312851-30312891)
[»] chr7 (1 HSPs)
chr7 (83-128)||(45623729-45623774)
[»] chr1 (3 HSPs)
chr1 (83-128)||(48226714-48226759)
chr1 (83-129)||(48215407-48215453)
chr1 (83-128)||(23590561-23590606)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 160 - 332
Target Start/End: Original strand, 20100432 - 20100604
Alignment:
Q  160 aactgaaataataaaaaatgtatattacaataagtgcaattgtgtgtgatcaatgtaatatttaacacacaacttccgtagaaatacaatgtcttactat 259  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  20100432 aactgaaataaaagaaaatgtatattacaataaatgcaattgtgtgtgatcaatgtaatatttaacacacgacttctgtagaaatacaatgtctcactat 20100531  T
Q  260 gttacagttaaagcacaaaaatcacaggataaatgacaaatacctttcgcaagcttgtatactgcataatctt 332  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  20100532 gttaccgttaaagcacaaaaatcacaggataaacgacaaatacctttcgcaagcctgtatactgcataatctt 20100604  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 20100603 - 20100639
Alignment:
Q  353 tttcatcatgcatgtgacaagtttgatataggaatgg 389  Q
    |||||||||||||||||||||||||||||||||||||    
T  20100603 tttcatcatgcatgtgacaagtttgatataggaatgg 20100639  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 20097005 - 20097056
Alignment:
Q  148 atgcaatgatggaactgaaataataaaaaatgtatattacaataagtgcaat 199  Q
    |||||| | |||||||||||||| | ||||||||||||||||||||||||||    
T  20097005 atgcaagggtggaactgaaataaaagaaaatgtatattacaataagtgcaat 20097056  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 17062554 - 17062599
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatggcacc 128  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17062554 gtgcaccataccaaagaatatgcccttgggtaggctagatggcacc 17062599  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21347474 - 21347416
Alignment:
Q  1 taaaacagttggggtgaatgtcataatctcatataaacctacaaactggctataacagg 59  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||||||||  ||||||||    
T  21347474 taaaatagttggggtgaatgtcacaatctcacataaacctgcaaactggtcataacagg 21347416  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 17062475 - 17062530
Alignment:
Q  4 aacagttggggtgaatgtcataatctcatataaacctacaaactggctataacagg 59  Q
    |||| ||||||||||||||||||||| | ||||||||  ||||| |||||||||||    
T  17062475 aacaattggggtgaatgtcataatcttacataaacctgtaaacttgctataacagg 17062530  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14721684 - 14721730
Alignment:
Q  1 taaaacagttggggtgaatgtcataatctcatataaacctacaaact 47  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  14721684 taaaacagttggggtgaatgtcataatcacacataaacctacaaact 14721730  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 30312851 - 30312891
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatg 123  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  30312851 gtgcaccataccaaaaaatatgcccttgggcaggctagatg 30312891  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 45623774 - 45623729
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatggcacc 128  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  45623774 gtgcaccataccaaacaatatgcactttggtaggctagatggcacc 45623729  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 48226714 - 48226759
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatggcacc 128  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  48226714 gtgcaccataccaaacaatatgccctttggcaggctagatggcacc 48226759  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 48215453 - 48215407
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatggcacct 129  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||    
T  48215453 gtgcaccataccaaacaatatgccctttggcatgctagatggcacct 48215407  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 23590561 - 23590606
Alignment:
Q  83 gtgcaccataccaaacaatatgcccttgggtaggctagatggcacc 128  Q
    ||||||||||||||| |||||||||||||| | |||||||| ||||    
T  23590561 gtgcaccataccaaaaaatatgcccttgggcatgctagatgccacc 23590606  T

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