View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_40 (Length: 407)
Name: NF9401_low_40
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 6992544 - 6992932
Alignment:
| Q |
1 |
tctctggacataaaacattctacactcttccaaatttctctggtttgaaatcatctgtaggcaatttctggctaaagcaacatcactaagactaccacca |
100 |
Q |
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| T |
6992544 |
tctctggacataaaacattctacactcttccaaatttctctggtttgaaatcatctgtaggcaatttctggctaaagcaacatcactaagactaccacca |
6992643 |
T |
|
| Q |
101 |
tcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccataaaacaaattgtttgata |
200 |
Q |
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| T |
6992644 |
tcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccataaaacaaattgtttgata |
6992743 |
T |
|
| Q |
201 |
gattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttgtctgatacatcaaatattagcaacttaggcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6992744 |
gattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttttctgatacatcaaatattagcaacttaggcat |
6992843 |
T |
|
| Q |
301 |
tgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagctgagagg |
389 |
Q |
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| T |
6992844 |
tgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagctgagagg |
6992932 |
T |
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