View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_43 (Length: 399)
Name: NF9401_low_43
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 32034009 - 32033639
Alignment:
| Q |
20 |
cttctggccagcttgacagtggccatttttgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaatcagagccagagtggtaaaaggcc |
119 |
Q |
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| T |
32034009 |
cttctggccagcttgacagtggccatttttgctacaaatgaagtagaagtcccctgggttggtgaggttgatggaatcagagccagagtggtaaaaggcc |
32033910 |
T |
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| Q |
120 |
tttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattgcttgtgctacgagaaaactgcatgttgcatactag |
219 |
Q |
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| T |
32033909 |
tttgcagaatttatgttgcagtgaatgtagtcttggtgactcacctccataacatcatgatattgcttgtggtacgagaaaactgcatgttgcatactac |
32033810 |
T |
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| Q |
220 |
gttgttattaatcaactataatgtaaataaataagatttaaaatcccggtcgtaataacaatcacga--tctaatcctatgaagaacgatagttaaatgc |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32033809 |
gttgttattaatcaactataatgtaaataattaagatttaaaatcccggtcgtagtaacaatcacgatttctattcctatgaagaacgatagttaaatgc |
32033710 |
T |
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| Q |
318 |
aactgcactaggtgaatcataggatcgcatagcgatcacacaacattaaaattataatgttatcgacctat |
388 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033709 |
aactacactaggtgaatcataggatcgcatagcgatcacacaacattaaaattataatgttatcgacctat |
32033639 |
T |
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