View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_44 (Length: 397)
Name: NF9401_low_44
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_44 |
 | |
|
| [»] chr7 (11 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0464 (1 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 19779761 - 19780144
Alignment:
| Q |
14 |
acaacacacttataatggcaagcaatcaacaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtggagcaaattac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19779761 |
acaacacacttataatggcaagcaatcaagaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtagagcaaattac |
19779860 |
T |
|
| Q |
114 |
atctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgt |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19779861 |
atctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgt |
19779960 |
T |
|
| Q |
214 |
ttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataacttgaagatagtcctccccaaa |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19779961 |
ttgaattaatttgaagtattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataacttgaagatagtcctccccaaa |
19780060 |
T |
|
| Q |
314 |
aggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19780061 |
aggaaattcaacaactcttgaatgatctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
19780144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 19887622 - 19887245
Alignment:
| Q |
14 |
acaacacacttataatggcaagcaatcaacaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtggagcaaattac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19887622 |
acaacacacttataatggcaagcaatcaacaaggctacgatggttatgacaaccatgcaattatctataactggagagataaaacggtagagcaaattac |
19887523 |
T |
|
| Q |
114 |
atctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgt |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
19887522 |
atctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaatcttttgagagtaagtttctattcaatgatttaattgt |
19887423 |
T |
|
| Q |
214 |
ttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataacttgaagatagtcctc------ |
307 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
19887422 |
ttgaattaattttaagtgttttataatcattgaactgaatgagtttgtttt------------tatatattattataacttaaagatggtcctcggtcct |
19887335 |
T |
|
| Q |
308 |
cccaaaaggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||| ||| |||||||||||| |
|
|
| T |
19887334 |
cccaaaacgaaattcaacgactcttgaatgatctttatttggctgctattcagaacattttatcccaaactaatgtatgaagttgttctc |
19887245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 397
Target Start/End: Original strand, 19358122 - 19358457
Alignment:
| Q |
67 |
catgcaattctctataattggagagataaaacggtggagcaaattacatctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagct |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| | |||||||||| ||||| |||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
19358122 |
catgcaattctctataattggagagataaaagagtaaagcatactacatctgtcaacaataaaatatggtggttttataccaaagattatgttgaaagct |
19358221 |
T |
|
| Q |
167 |
tagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgg |
266 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||| ||||||||| |||| |||| |||| ||| |||||||||| |||||||||||||||||||| | |
|
|
| T |
19358222 |
tagtttcatcctcttgaaagtaagtttctcttctatgatttaattgttcaaatttatttaaagttttttataatctctgaactgaatgagtttgtttctg |
19358321 |
T |
|
| Q |
267 |
gttgttcttatatatatt------attataacttgaagatagtcctccccaaaaggaaattcaacgactcttgaatgatctttatttggttggcattcac |
360 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| |||| || ||||||||||||| |||||||||||| ||| | |||||||| ||| |
|
|
| T |
19358322 |
gttgttcttatatatattaatataattataacttgacgataatcct-ccgtaaaggaaattcaataactcttgaatgaccttaacttggttggtatttgg |
19358420 |
T |
|
| Q |
361 |
aatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
19358421 |
aaaattttatacaaaactaaagtatgaagttgttctc |
19358457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 19350947 - 19350798
Alignment:
| Q |
77 |
tctataattggagagataaaacggtggagcaaattacatctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaac |
176 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||| ||||||| ||||| ||||| ||||||| | | | | ||||||||||||||||||||||||| |
|
|
| T |
19350947 |
tctataattggagagataaaagagtagagcatattaaatctgtcaacaatagaatatggtggttttttgctaggaattatgttgaaagcttagtttcaac |
19350848 |
T |
|
| Q |
177 |
cttttgagagtaagtttctcttcaatgatttaactgtttgaattaatttg |
226 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
19350847 |
ctcttgaaagtaagtttctctttaatgatttaattgtttgaatttatttg |
19350798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 29881560 - 29881638
Alignment:
| Q |
147 |
caaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaattaattt |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||||||| |||| | |||||||| ||||| ||||||||| |
|
|
| T |
29881560 |
caagaattatgttgaaagcttagtttcaattttttgaaagtaagttcctctcccatgatttacatgtttaaattaattt |
29881638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 397
Target Start/End: Original strand, 19722410 - 19722567
Alignment:
| Q |
244 |
tgaactgaatgagtttgttttgggttgttcttatata-tattat----tataacttgaagatagtcctccccaaaaggaaattcaacgactcttgaatga |
338 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||||| |||||| |||||||||| || |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
19722410 |
tgaactgaatgtgtttgttttggtttgttttaatataatattataagttataacttgacgactatcctcct-aaaaggaaattcaatgactcttgaatga |
19722508 |
T |
|
| Q |
339 |
tctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
| ||| ||||||||| |||| || | |||| |||||||| |||| ||||||||||| |
|
|
| T |
19722509 |
tgtttgtttggttggttttcagaacatcttatacaaaactagagtatcaagttgttctc |
19722567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 14076907 - 14076993
Alignment:
| Q |
133 |
ttgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaat |
219 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||| || || || ||| || |||||||| |||||| |||||||| ||||||||| |
|
|
| T |
14076907 |
ttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaat |
14076993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 14386935 - 14387021
Alignment:
| Q |
133 |
ttgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaat |
219 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||| || || || ||| || |||||||| |||||| |||||||| ||||||||| |
|
|
| T |
14386935 |
ttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaat |
14387021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 19645501 - 19645452
Alignment:
| Q |
146 |
ccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttct |
195 |
Q |
| |
|
||||||||||||||||||| || |||||||| | |||| ||||||||||| |
|
|
| T |
19645501 |
ccaaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttct |
19645452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 29476090 - 29476037
Alignment:
| Q |
145 |
accaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctctt |
198 |
Q |
| |
|
||||||| ||| |||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
29476090 |
accaaggtttactttgaaagcttagtttcaattttttgaaagtaagtttctctt |
29476037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 29921770 - 29921726
Alignment:
| Q |
148 |
aaggattatgttgaaagcttagtttcaaccttttgagagtaagtt |
192 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
29921770 |
aaggattatgttgaaagcttagttccaattttttgaaagtaagtt |
29921726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 32578769 - 32578389
Alignment:
| Q |
18 |
cacacttataatggcaagcaatcaacaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtggagcaaattacatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
32578769 |
cacacttataatggcaagcaatcaacaaggctatgacggtcatgacaaccatgcaattctctatgattggagaaataaaagggttgagcaaattacatct |
32578670 |
T |
|
| Q |
118 |
gtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttga |
217 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32578669 |
gttgacgatgaaatattgtggtttcataccaaggcttatgttgaaagcttattttcaaccttttgagagtaagtttctcttcaatgatttaattgtttga |
32578570 |
T |
|
| Q |
218 |
attaatttgaagcattttataatcattgaactgaatgag-tttgttttgggttgttcttatatatattattataacttgaagatagtcctccccaaaagg |
316 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||| || ||| ||||||||||| || |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
32578569 |
attaatttcaagtgttttataatcattaaactgaattagtttttttttgggttgt--ttttatatattattataacttgaagatagtcct-ccctaaagg |
32578473 |
T |
|
| Q |
317 |
aaattcaacgactcttgaatg---atctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||| |||||| |||||||||||| |
|
|
| T |
32578472 |
aaattcaacgactcttgaatgataatctttatttggttggcattcataatgtttcattcaaaacgaaagtatgaagttgttctc |
32578389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 66 - 397
Target Start/End: Complemental strand, 12734667 - 12734340
Alignment:
| Q |
66 |
ccatgcaattctctataattggagagataaaacggtggagcaaattacatctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagc |
165 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| || ||||||| |||| | ||||||| |||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
12734667 |
ccatgcaattatctataattggagagataaaagggttgaccaaattaaatctcttgacaatgtaataatgtggtttcaaaccagggattattttgaaagc |
12734568 |
T |
|
| Q |
166 |
ttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttg |
265 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||| | || ||||| ||||||||||| |
|
|
| T |
12734567 |
ttagtttcaacctcttgaaagtaagtttctcttcaatgatttaatagttctaattaattttaagcgttttataatctctaaattgaataagtttgttttg |
12734468 |
T |
|
| Q |
266 |
ggttgttcttatatatattattataacttgaagatagtcctccccaaaaggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgt |
365 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||| | ||||||||| ||| | || | |
|
|
| T |
12734467 |
ggttgt--ttttatatattattatgacttgaagataatcct--ccaaaaggaaattcaatacctcttgaatgatctctctttggttggtatttataacat |
12734372 |
T |
|
| Q |
366 |
tttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
||||| |||| |||||||| ||| |||||||| |
|
|
| T |
12734371 |
tttatacaaatctaaagtatgaaattgttctc |
12734340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 12734701 - 12734672
Alignment:
| Q |
14 |
acaacacacttataatggcaagcaatcaac |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12734701 |
acaacacacttataatggcaagcaatcaac |
12734672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 380
Target Start/End: Original strand, 14749532 - 14749895
Alignment:
| Q |
14 |
acaacacacttataatggcaagcaatcaacaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtggagcaaattac |
113 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| | |||| | || ||| |||||||||| |||||||||||| |||||||| ||| || |||||||| |
|
|
| T |
14749532 |
acaacacacttataatggcaatcaatcgacaaggctatgatgatcataacagccatgcaattatctataattggatagataaaagggttgaacaaattac |
14749631 |
T |
|
| Q |
114 |
atctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgt |
213 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| || |||| ||||||||||||||||||||||||| | | |
|
|
| T |
14749632 |
atctggtgacaatgaaatattgtggttttataccaaggattttgttgaaagcttaatttcaagctcttgaaagtaagtttctcttcaatgatttaatttt |
14749731 |
T |
|
| Q |
214 |
ttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataacttgaagatagtcctccccaaa |
313 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
14749732 |
ttgaattaattttaagtgttttataatcattgaactgaatgagtttgttttcggttgt--ttttatatattattataacttcaagatagtcct-cccaaa |
14749828 |
T |
|
| Q |
314 |
aggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgttttatccaaaactaa |
380 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||| |
|
|
| T |
14749829 |
acgaaattcaacgactcttgaatgatatttatttggttgcttttcagaacattttatccaaaactaa |
14749895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 8220 - 8599
Alignment:
| Q |
14 |
acaacacacttataatggcaagcaatcaacaaggccacgatggttatgacaaccatgcaattctctataattggagagataaaacggtggagcaaattac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | || | || | | |||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
8220 |
acaacacacttataatggcaagcaatcaacaaggctatggtgatgataaaagccatgcaattatctataattggagagataaaagggttgagcaaattaa |
8319 |
T |
|
| Q |
114 |
atctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgt |
213 |
Q |
| |
|
|||| | ||||||| |||| |||||||||| |||| ||||||| ||||||||||||||||||||| |||| |||||||||||||| ||| |||||| || |
|
|
| T |
8320 |
atctcttgacaatgtaataatgtggtttcaaaccagggattattttgaaagcttagtttcaacctcttgaaagtaagtttctctttaataatttaatagt |
8419 |
T |
|
| Q |
214 |
ttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataacttgaagatagtcctccccaaa |
313 |
Q |
| |
|
| ||||||||| |||| |||||||||| | || ||||| ||||||||||||||||| || ||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
8420 |
tctaattaattttaagcgttttataatctctaaattgaataagtttgttttgggttgt--ttttatatattattatgacttgaagataatcct--ccaaa |
8515 |
T |
|
| Q |
314 |
aggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgttttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| ||||| || |||||| ||||||||||||| ||| |||||||| |
|
|
| T |
8516 |
aggaaattcaatacctcttgaatgatctctctttggttggtattcataacattttatacaaaactaaagtatgaaattgttctc |
8599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 67 - 397
Target Start/End: Complemental strand, 18913409 - 18913086
Alignment:
| Q |
67 |
catgcaattctctataattggagagataaaacggtggagcaaattacatctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagct |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||| || || ||||| | ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18913409 |
catgcaattctctataattggagagataataaagttgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagct |
18913313 |
T |
|
| Q |
167 |
tagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaattaatttgaagcattttataatcattgaactgaatgagtttgttttgg |
266 |
Q |
| |
|
| || ||||||| |||| ||||||||||||||||||||||||| |||| | |||||| ||| |||||||||| |||| |||||||||||||||| | |
|
|
| T |
18913312 |
tggtatcaacctcttgaaagtaagtttctcttcaatgatttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgtttttg |
18913213 |
T |
|
| Q |
267 |
gttgttcttatatatattattataacttgaagatagtcctccccaaaaggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgtt |
366 |
Q |
| |
|
|||||| ||| ||||||||||||||||| | ||| |||| ||||||||||||||||| || |||||||||| ||| ||| ||||| ||||| || || |
|
|
| T |
18913212 |
gttgtt-tta-atatattattataacttaagaataatcct-cccaaaaggaaattcaattacccttgaatgat-tttgtttagttggtattcagaacatt |
18913117 |
T |
|
| Q |
367 |
ttatccaaaactaaagtaagaagttgttctc |
397 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||| |
|
|
| T |
18913116 |
ttatacaaaactaaagtatgaagtttttctc |
18913086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 18908595 - 18908517
Alignment:
| Q |
136 |
tggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtt |
214 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |||||||||| |||| ||||||||| ||||| ||||||||| |||| |
|
|
| T |
18908595 |
tggtttaataccaatgattatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgatgatttaattgtt |
18908517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 18920415 - 18920306
Alignment:
| Q |
287 |
tataacttgaagatagtcctccccaaaaggaaattcaacgactcttgaatgatctttatttggttggcattcacaatgttttatccaaaact-aaagtaa |
385 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| | | ||| || || ||| ||||||| |||||| |
|
|
| T |
18920415 |
tataacttgaagataatcctccc-aaaaggaaattcaacgagtcttgcatgatctttatttggtttgtaatcaaaacattgtatgcaaaactgaaagtat |
18920317 |
T |
|
| Q |
386 |
gaagttgttct |
396 |
Q |
| |
|
||||||||||| |
|
|
| T |
18920316 |
gaagttgttct |
18920306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 18920616 - 18920519
Alignment:
| Q |
67 |
catgcaattctctataattggagagataaaacggtggagcaaattacatctgtcgacaatgaaatattgtggtttcataccaaggattatgttgaaagct |
166 |
Q |
| |
|
|||||||||||||||||||||||||| || | || ||||||||| || || ||||| ||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
18920616 |
catgcaattctctataattggagagaaaataaagttgagcaaattgcaactt---acaatcaaataatgtggtttcatacaaagaattatgttgaaagct |
18920520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 20699264 - 20699218
Alignment:
| Q |
152 |
attatgttgaaagcttagtttcaaccttttgagagtaagtttctctt |
198 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
20699264 |
attatgttgaaagtttagtttcaactttttgaaagtaagttcctctt |
20699218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 24330666 - 24330613
Alignment:
| Q |
146 |
ccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttc |
199 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
24330666 |
ccaatgattatgttgaaagcttagttccaagtttttgaaagtaagtttctcttc |
24330613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 4571207 - 4571256
Alignment:
| Q |
150 |
ggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttc |
199 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
4571207 |
ggattatgttgaaagcttagttccaattttttgaaagtaagtttctcttc |
4571256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 21855150 - 21855097
Alignment:
| Q |
146 |
ccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttc |
199 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
21855150 |
ccaatgattatgttgaaagcttagttccaagtttttgaaagtaagtttctcttc |
21855097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 4014732 - 4014680
Alignment:
| Q |
146 |
ccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctctt |
198 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
4014732 |
ccaaagattatgttgaaagcttagttccaattttttgaaagtaagtttctctt |
4014680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 4016566 - 4016513
Alignment:
| Q |
146 |
ccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttc |
199 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| |||||| ||||||||||||||| |
|
|
| T |
4016566 |
ccaaagattatgttgaaagtttagttccaattttttgaaagtaagtttctcttc |
4016513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 53775098 - 53775167
Alignment:
| Q |
151 |
gattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaatt |
220 |
Q |
| |
|
||||||||||||||||| || ||||| | |||| |||||||| |||||| | |||||| |||||||||| |
|
|
| T |
53775098 |
gattatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatt |
53775167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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