View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_46 (Length: 388)
Name: NF9401_low_46
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 7606739 - 7607102
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606739 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
7606838 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606839 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
7606938 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606939 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaa |
7607038 |
T |
|
| Q |
317 |
tgaatcgacaactagaggtacgtagaccggttccaggatgtcagcaacacgaatattctctgct |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607039 |
tgaatcgacaattagaggtacgtagaccggttccaggatgtcagcaacacgaatattctctgct |
7607102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 59 - 376
Target Start/End: Original strand, 7629166 - 7629483
Alignment:
| Q |
59 |
gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttca |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |||||||||| | |||||||| ||||| |||||| |
|
|
| T |
7629166 |
gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttca |
7629265 |
T |
|
| Q |
159 |
gcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || | |||||||||||||||||||| ||||| |
|
|
| T |
7629266 |
gcccatgaattgatgaaatgccacacggactttccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaa |
7629365 |
T |
|
| Q |
259 |
cagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaatgaatcgacaactagaggtacgtagaccggttccaggatgtc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||| || |||||||| | ||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
7629366 |
cagccaacaatggttttgacgtgccttcgtagcttttatctcctataaaggcaaatagtgaatcgacaatttgaggtacgtagaccggttctaggatgtc |
7629465 |
T |
|
| Q |
359 |
agcaacacgaatattctc |
376 |
Q |
| |
|
|||||||| | ||||||| |
|
|
| T |
7629466 |
agcaacacaagtattctc |
7629483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 7637570 - 7637933
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7637570 |
aaaactcaacctatcagagtgatcattttgttgctccaaagtgaaaggaaatcgtataggccgttgaacaccatttggaaaccaacgctctagtgttggg |
7637669 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
7637670 |
ggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacgacaacatggttaaatg |
7637769 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatag-tttttatctccgatgaaggcaaaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| || ||| || ||| || ||||| | |
|
|
| T |
7637770 |
agcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatagcttcttacttcggat-aaagcaaata |
7637868 |
T |
|
| Q |
316 |
atgaatcgacaactagaggtacgtagaccggttccaggatgtcagcaacacgaatattctctgct |
380 |
Q |
| |
|
|| |||| |||| | ||||||||||| ||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
7637869 |
ataaatcaacaattggaggtacgtaggtgggttctaggatgtctgcaacacaagtattctctgct |
7637933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 59 - 376
Target Start/End: Original strand, 7615777 - 7616094
Alignment:
| Q |
59 |
gaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttca |
158 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||| |
|
|
| T |
7615777 |
gaaaggaaatcgtatgggctgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttca |
7615876 |
T |
|
| Q |
159 |
gcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7615877 |
gcccatgaattgatgaaatgccacacagactctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaa |
7615976 |
T |
|
| Q |
259 |
cagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaatgaatcgacaactagaggtacgtagaccggttccaggatgtc |
358 |
Q |
| |
|
| |||||||| |||||||| |||||||| ||| ||| | | ||| | || || ||||||||||| |||| | ||||||| ||| ||||| |||||||| |
|
|
| T |
7615977 |
ctgccaacaacggttttgaggtgccttcgtagctttcaaccccggttaaagcgaaaaatgaatcaacaattggaggtacataggtaggttctaggatgtc |
7616076 |
T |
|
| Q |
359 |
agcaacacgaatattctc |
376 |
Q |
| |
|
|||||||| | ||||||| |
|
|
| T |
7616077 |
agcaacacaagtattctc |
7616094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 7655753 - 7655480
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||| ||| ||||| ||||||| |||||| |||| |||| |||||||||||||| || ||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
7655753 |
aaaacttaacccatcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaaccaacgctccagcgttggg |
7655654 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
| || |||||||||| | |||||| ||||| ||||||||||| |||||||||||||||||| ||||| ||||||| | || ||||||||||| |
|
|
| T |
7655653 |
gagttagatatttgat---gatgacaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgtccgtcagctacgacatggttgaaat |
7655557 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagttt |
293 |
Q |
| |
|
| |||||||| || ||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
7655556 |
taaagccaatgaagatgccgtcaactagctccgtgacttgaacagccaacaatggttttgatgtgccttcgtagttt |
7655480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 39098306 - 39098448
Alignment:
| Q |
153 |
atttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgtta |
252 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||||| || || || |||||||| |||| ||| | |||||||||||||| ||||| ||||| || | |
|
|
| T |
39098306 |
atttcagaccatgaattgatgaaatgccaaaacgacttaccatcgacaacaacatgattgattgagaagccaatgaaaataccatcaacaagctcagtaa |
39098405 |
T |
|
| Q |
253 |
tttgaacagccaacaatggttttgacgtgccttcatagttttt |
295 |
Q |
| |
|
|||||| || | |||||||||||| |||||||| |||||||| |
|
|
| T |
39098406 |
cttgaactgcaagcaatggttttgatgtgccttcgtagttttt |
39098448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 8935717 - 8935356
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| || |||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
8935717 |
aaaactcaacccatcagagtgattcttttgttgctccaaagtgaaaggaaatcgtattggccgttgaacaccatccggaaaccaacgttctagtgttgga |
8935618 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||| | ||||| || | |
|
|
| T |
8935617 |
ggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaatg |
8935518 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||||||| |||||||| ||| || || | || | || |||||||| |
|
|
| T |
8935517 |
agcaaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgccttcgtagcttctaacatcggttaaagcaaaaaa |
8935418 |
T |
|
| Q |
317 |
tgaatcgacaactagaggtacgtagaccggttccaggatgtcagcaacacgaatattctctg |
378 |
Q |
| |
|
|||||| |||| | | ||||||||| ||||| || ||||||||||||| | ||||||||| |
|
|
| T |
8935417 |
tgaatcaacaattggtggtacgtaggtgggttctagaatgtcagcaacacaagtattctctg |
8935356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 8910778 - 8910525
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
8910778 |
aaaactcaacccatcagagtgatccttttgttgctccaaagtgaaaggaaatcgtataggccgttgaac----tttggaaaccaacgctctagtgttggg |
8910683 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
8910682 |
ggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgccacacggactttccgtcaacgacaacatggttaaatg |
8910583 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
8910582 |
agcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt |
8910525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 124 - 378
Target Start/End: Complemental strand, 8934669 - 8934415
Alignment:
| Q |
124 |
atatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaacc |
223 |
Q |
| |
|
||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||| || |||||||| |
|
|
| T |
8934669 |
atatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacagactttccgtcaatgacagcgtggttaaatgagcaacc |
8934570 |
T |
|
| Q |
224 |
aatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaatgaatcg |
323 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||| ||||||||||||||||| |||||||| ||| || || | ||| | || |||||||||||||| |
|
|
| T |
8934569 |
aatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgccttcgtagcttctaacaccggttaaagcaaaaaatgaatca |
8934470 |
T |
|
| Q |
324 |
acaactagaggtacgtagaccggttccaggatgtcagcaacacgaatattctctg |
378 |
Q |
| |
|
|||| | ||||||||||| ||||| || ||||||||||||| | ||||||||| |
|
|
| T |
8934469 |
acaattggaggtacgtaggtgggttctagaatgtcagcaacacaagtattctctg |
8934415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 137 - 378
Target Start/End: Complemental strand, 8930201 - 8929960
Alignment:
| Q |
137 |
acaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccg |
236 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| |||| |||| | ||||| || ||||||||||||||||||||| |
|
|
| T |
8930201 |
acaacaactacgtgagatttcagcccatgaattgatgaaatgtcacacagactttccatcaatgacagcgtggttaaatgagcaaccaatgaaaataccg |
8930102 |
T |
|
| Q |
237 |
tcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaatgaatcgacaactagaggta |
336 |
Q |
| |
|
|||| || ||| |||| ||||| ||||||||||||||||| ||| |||| ||| || || | ||| | || |||||||||||||| |||| | |||||| |
|
|
| T |
8930101 |
tcaattaactcagttacttgaaatgccaacaatggttttgatgtgacttcgtagcttctaacaccggttaaagcaaaaaatgaatcaacaattggaggta |
8930002 |
T |
|
| Q |
337 |
cgtagaccggttccaggatgtcagcaacacgaatattctctg |
378 |
Q |
| |
|
||||| ||||| || ||||||||||||| | ||||||||| |
|
|
| T |
8930001 |
cgtaggtgggttctagaatgtcagcaacacaagtattctctg |
8929960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 8102979 - 8103257
Alignment:
| Q |
17 |
aaaactcaactcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttggg |
116 |
Q |
| |
|
|||||||||| ||||| | || ||||||||| ||| | ||||||| ||||||||||||||| ||||||||||| |||||||||||| || ||||||| | |
|
|
| T |
8102979 |
aaaactcaacccatcagattggttattttgtagcttcttagtgaagggaaatcgtatgggacattgaataccatctggaaaccaacgttcaagtgttgag |
8103078 |
T |
|
| Q |
117 |
ggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaagg |
216 |
Q |
| |
|
|||||||| |||||| | ||||| ||| ||||| ||||||||||| ||||| ||||||| ||| | || |||| ||||| || |||||||| || | |
|
|
| T |
8103079 |
agtttggatgtttgattgcaacaaccaccacgtgagatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaag |
8103178 |
T |
|
| Q |
217 |
agcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagttttt |
295 |
Q |
| |
|
||||||| || || |||||||||| ||| || | ||| || || |||||||||| ||| |||||||| |||||||| |
|
|
| T |
8103179 |
taaaaccaataaagatgccgtcaactaactctgtcacttgcacggcaaacaatggttgtgatgtgccttcgtagttttt |
8103257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 325
Target Start/End: Complemental strand, 40146992 - 40146697
Alignment:
| Q |
27 |
tcatcacagtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggata |
126 |
Q |
| |
|
|||||| ||| ||| |||||| |||| |||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| | ||||||||| |
|
|
| T |
40146992 |
tcatcagagtcattcttttgtggctctatagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacgttctagcgttatgagtttggata |
40146893 |
T |
|
| Q |
127 |
tttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaat |
226 |
Q |
| |
|
||||| |||||||| || || |||| ||||||||||| |||||| |||| ||||| ||||||||| || ||||||| || | ||||||| |
|
|
| T |
40146892 |
cttgat---tgcaacaaccacgcgagattttcgcccatgaattaatgaaaagccatgtggactctccgtcaacaaccgcatggttaaatgtaaaaccaat |
40146796 |
T |
|
| Q |
227 |
gaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtttttatctccgatgaaggcaaaaaatgaatcgac |
325 |
Q |
| |
|
||| | |||||||||| ||| || | ||| ||||| |||||||||| ||| |||||||| || |||||| ||| | | || | ||||||||||||||| |
|
|
| T |
40146795 |
gaagaagccgtcaactaactctgtcacttgcacagctaacaatggttgtgatgtgccttcgtaatttttaactctggttaatggaaaaaatgaatcgac |
40146697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 6501031 - 6501207
Alignment:
| Q |
34 |
agtgattattttgttgctccgtagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatc |
133 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||||||||||||| | | |||||| ||||||||||| |||| ||||||| |||| ||||||||||||||| |
|
|
| T |
6501031 |
agtgattattttgaggctccattgtggaaggaaatcgtatggaacgctgaatatcatttggaaac-aacgttctagtgatgggagtttggatatttgatt |
6501129 |
T |
|
| Q |
134 |
accacaacaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaa |
214 |
Q |
| |
|
|| ||||||| ||||| ||||||||||| ||| |||| |||||||||| ||||||||| || ||| ||||||||||| |
|
|
| T |
6501130 |
ac---aacaaccacgtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtgaccacatggttgaa |
6501207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 302
Target Start/End: Original strand, 11969547 - 11969696
Alignment:
| Q |
153 |
atttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgtta |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| | ||||| |||| | | |||||||| || || ||||||| ||| |||| |
|
|
| T |
11969547 |
atttcagcccatgaattgatgaaatgccaagtggacactccgtcaacggcgacatgattgattgtaaagccaatgaagatgccatcaactaactctgtta |
11969646 |
T |
|
| Q |
253 |
tttgaacagccaacaatggttttgacgtgccttcatagtttttatctccg |
302 |
Q |
| |
|
||| || || | |||||| | ||| || |||||||||||| || ||||| |
|
|
| T |
11969647 |
cttggactgcaagcaatggctctgatgtcccttcatagtttctaactccg |
11969696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 15190757 - 15190642
Alignment:
| Q |
60 |
aaaggaaatcgtatgggaagttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcag |
159 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||| || |||||||| ||| |||||||||| ||| |||| ||||| ||||||| |
|
|
| T |
15190757 |
aaaggaaatcgtatgggacgttgaattccatttggaaataaacgttcaagtgttggaggtacagatatttgat---ggcaagaaccacgtgagatttcag |
15190661 |
T |
|
| Q |
160 |
cccatgaattgatgaaatg |
178 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
15190660 |
ccagtgaattgatgaaatg |
15190642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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