View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_48 (Length: 381)
Name: NF9401_low_48
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 15678854 - 15678501
Alignment:
| Q |
21 |
aaaccatgtgtttattttgatgcttaacacatgcatgtattaagaacatttaaagcatgaattaaactcaaacggattctcagaatttattttaacggaa |
120 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15678854 |
aaaccacgtgtttattttgatgcttatcacatgcatgaattaagaacatttaaagtatgaattaaactcaaacggattctcagaatttattttaacggaa |
15678755 |
T |
|
| Q |
121 |
aagaaggattgttgtgagaatggaagatttaagaaaaaa--tatgttaggttaaacacaaatatggaaagaattaagaaagagaattggataaaaaatac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15678754 |
aagaaggattgttgtgagaatggaagatttaagaaaaaaaatatgctaggttaaacacaaatatggaaagaattaagaaagagaactggaaaaaaaaa-- |
15678657 |
T |
|
| Q |
219 |
ttaaaatcaatgcttagaaagagtataattattaggtcagtaaactaaattagatagtatttagcaatttctggaatttacctcaagaagcactcttaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15678656 |
ttaaaatcaatgcttagaaagagtataattattaggtcagtaaactaaattagatagtatttagcaatttgtggaatttacctcaagaagcactcttaga |
15678557 |
T |
|
| Q |
319 |
acagaataaaatgctgataaaagaagatacactaatttatcttgttagtattatct |
374 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
15678556 |
acagaataaaatgctgataaaaaaagatacactaatttatcttgttaatattatct |
15678501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University