View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_5 (Length: 652)
Name: NF9401_low_5
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 366 - 627
Target Start/End: Complemental strand, 33581273 - 33581007
Alignment:
| Q |
366 |
tatcagtttgactgcattgcatctaaatcttactagctaatgctgcttctactacata--cat-gttcatagttt--tttgttgaaggatttcaacgaag |
460 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||| | |||| ||||||||||||||||||||||| |
|
|
| T |
33581273 |
tatcaatttgactgcattgcatgcaaatcttactagctaatgctgcttctactacatattcttagttttttgtttattttgttgaaggatttcaacgaag |
33581174 |
T |
|
| Q |
461 |
ttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccgccttagaatgtggatatgcctgtg |
560 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33581173 |
ttgtggtcttgtaacttcaactcacagcttgcaaaggctttgtcaattgaaggagactaccgaggttaagtctccgccttagaatgtggatatgcctgtg |
33581074 |
T |
|
| Q |
561 |
ctgctgaagtacactacccagatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33581073 |
ctgctgaagtacactacccagatttgcaggttagttttgaaaggtttcaagaaaagacatctccttt |
33581007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 33581489 - 33581281
Alignment:
| Q |
18 |
aaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgccgtttttgttttaccatatcttataccatttatgcttttccctcttttcacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33581489 |
aaattgtaactttcacaccaagtgtaaactgtaaaggaaatgtttgccgtttttgttttaccatatcttataccatttatgcttttccctcttttcacat |
33581390 |
T |
|
| Q |
118 |
atttgtaccattggtctcatactactaaatatcaaaacatgtata----cctatacagctatacctacatttcctgcctgaaaatcatcttttacttttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33581389 |
atttgtaccattggtctcatactactaaatatcaaaacatgtatacctacctatacagctatacctacatttcctgcctgaaaatcaccttttacttttt |
33581290 |
T |
|
| Q |
214 |
tcacatgag |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
33581289 |
ccacatgag |
33581281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 437 - 627
Target Start/End: Complemental strand, 32356505 - 32356315
Alignment:
| Q |
437 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
536 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32356505 |
ttttattgaaggatttcaacaaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcaatctccg |
32356406 |
T |
|
| Q |
537 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
627 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
32356405 |
ccttagaatgtggatatgcctgtgctactgaagtacgctacccagagttgcaggttagtagtgaaaggctacaagaaaagacatctccttt |
32356315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 32356774 - 32356666
Alignment:
| Q |
159 |
tatacctatacagctatacctacatttcctgcctgaaaatcatcttttacttttttcacatgagtattcatgtctgataatatatatgtcaaaggttttt |
258 |
Q |
| |
|
||||||||||||||| ||||||||||| | || ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
32356774 |
tatacctatacagctttacctacattttcagcttgaaaatcaccttttactttttccacatgagtattcgtgtctgataatatatatgtcaaaggtgttc |
32356675 |
T |
|
| Q |
259 |
aatatatga |
267 |
Q |
| |
|
||||||||| |
|
|
| T |
32356674 |
aatatatga |
32356666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 32356621 - 32356583
Alignment:
| Q |
307 |
aattcataaattctgggcttggaatagtaaattatttat |
345 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32356621 |
aattcataaattctgggtctggaatagtaaattatttat |
32356583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 42305452 - 42305409
Alignment:
| Q |
402 |
ctaatgctgcttctactacat--acatgttcatagttttttgtt |
443 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
42305452 |
ctaatgctgcttctaccacatcgacatgttcatagttttttgtt |
42305409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 437 - 596
Target Start/End: Complemental strand, 17922440 - 17922281
Alignment:
| Q |
437 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
536 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
17922440 |
ttttgttaaaggttttcaatgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctctgtcaactgaaggagactaccggggttcagtctcgg |
17922341 |
T |
|
| Q |
537 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagtt |
596 |
Q |
| |
|
|| ||||| ||||||||| ||||||| | |||||| ||||||||| |||||||||||| |
|
|
| T |
17922340 |
ccatagaacgtggatatgtctgtgctagtaaagtaccctacccagagatgcaggttagtt |
17922281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 17970013 - 17969902
Alignment:
| Q |
18 |
aaattgtaactttcacacca-agtgtaaactgtaaaggaaatgtttgccgtttttgttttaccat----atcttataccatttatgcttttccctctttt |
112 |
Q |
| |
|
||||||||||||| ||||| |||| ||| |||||||| ||||||||| |||||| |||| | | |||||||| ||||||||||||||||||||| |
|
|
| T |
17970013 |
aaattgtaacttttacacccgagtgaaaattgtaaaggtaatgtttgctgtttttttttttctcttaaaatcttatataatttatgcttttccctctttt |
17969914 |
T |
|
| Q |
113 |
cacatatttgta |
124 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
17969913 |
cacacatttgta |
17969902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 592
Target Start/End: Complemental strand, 17956190 - 17956035
Alignment:
| Q |
437 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcagtctccg |
536 |
Q |
| |
|
||||||| | || |||||||||||| | |||| || ||| ||||||| |||||||||| ||||| |||| |||||||| |||| | ||||| ||||| |
|
|
| T |
17956190 |
ttttgttaacggttttcaacgaagtggaggtcatgtaacatcaactccaagcttgcaaaagctttttcaaatgaaggagggtacccgagttcactctccc |
17956091 |
T |
|
| Q |
537 |
ccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggtt |
592 |
Q |
| |
|
||||||| || || || || |||| ||||||||| ||| ||||| |||| |||| |
|
|
| T |
17956090 |
tcttagaacgttgacataactatgctactgaagtacgctatccagagttgctggtt |
17956035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 17969646 - 17969594
Alignment:
| Q |
390 |
aaatcttactagctaatgctgcttctactacatacatgttcatagttttttgtt |
443 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
17969646 |
aaatcttacttgctgatgctgcttctactaca-acatggtcttagttttttgtt |
17969594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 529
Target Start/End: Complemental strand, 17969586 - 17969494
Alignment:
| Q |
437 |
ttttgttgaaggatttcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaaggagactaccggggttca |
529 |
Q |
| |
|
||||||| |||| ||||||| ||||| || ||||||||| |||||| ||| | ||||||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
17969586 |
ttttgttaaaggttttcaacaaagttttgttcttgcaacctcaacttacaacatgcaaatgcttcttcagctgattgagactacccgggttca |
17969494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 509 - 596
Target Start/End: Complemental strand, 8024690 - 8024603
Alignment:
| Q |
509 |
gaaggagactaccggggttcagtctccgccttagaatgtggatatgcctgtgctgctgaagtacactacccagatttgcaggttagtt |
596 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||| || |||||| ||||||||| ||||||||||||| |
|
|
| T |
8024690 |
gaaggagactaccagggttcagtctcggccttagaacgtggatatgtctgtgctactaaagtaccctacccagagttgcaggttagtt |
8024603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 8024907 - 8024847
Alignment:
| Q |
452 |
tcaacgaagttgtggtcttgcaacttcaactcacagcttgcaaatgctttgtcaattgaag |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
8024907 |
tcaacgaagttgtggtcttgcaacttcaacttacagcttgcaaatgctttggcaactgaag |
8024847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University