View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_50 (Length: 377)
Name: NF9401_low_50
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 46536737 - 46537100
Alignment:
| Q |
8 |
cagagaattcaaatgggctaaaatttataaattaaaaccttgtacgtcgacaaggaaaaccaggcgtaactttcatgagtaagccactgttaggttctgg |
107 |
Q |
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| T |
46536737 |
cagagaattcaaatgggctaaaatttataaattaaaaccttgtacgtcgacaaggaaaaccaggcgtaactttcatgagtgagccactgttaggttctgg |
46536836 |
T |
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| Q |
108 |
ctctccttaccactgcatcggcggatcaacctcatgagtgaagactttataactgagttgatttgatttcttaacaaaatctaaactgaaaaatgaatta |
207 |
Q |
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| T |
46536837 |
ctctccttaccactgcatcgacggatcaacctcatgagtgaagactttataactgagttgatttgatttcttaacaaaatctaaactgaaaaatgaatta |
46536936 |
T |
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| Q |
208 |
ggtgtcgtcaaaatctaagttgaaaacatataatatatcaaatttgcaaataaatagaaattaacttgtcaaacaaaacagattctataacataagcaaa |
307 |
Q |
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| T |
46536937 |
ggtgtcgtcaaaatctaagttgaaaacgtataatatatcaaatttgcaaataaatagaaattaacttgtcaaacaaaacagattctataacataagcaaa |
46537036 |
T |
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| Q |
308 |
gaagtaagagacttcgcctttggaatggatgtagagtgattaatagtcttctcgatctcatttt |
371 |
Q |
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| T |
46537037 |
gaagtaagagactttgcctttggaatggatgtagagtgattaatagtcttctcgatctcatttt |
46537100 |
T |
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