View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_55 (Length: 368)
Name: NF9401_low_55
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 37219713 - 37220062
Alignment:
| Q |
1 |
agtatttggtgatattggtgacattggtcaaccacagtgtcacagatgtnnnnnnnnnnnnnnnnnnttatgaaagagagagaagaaaaccacttgtata |
100 |
Q |
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| T |
37219713 |
agtatttggtgatattggtgacattggtcaaccacagtgtcacagatgtaaaaaaaacaaaaaaaaattatgaaagagagagaagaaaaccacttgtata |
37219812 |
T |
|
| Q |
101 |
tgttcgaacacgagtatttgcagcttaacatatttttcatacctattcaacaccaacttgttctattgcgaatacaaatatctttttgtgaccttgtata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219813 |
tgttcgaacacgagtatttgcagcttaacatatttttcatacctattcaacaccaacttgttctattgcgaatacaaatatctttttgtgaccttgtata |
37219912 |
T |
|
| Q |
201 |
cttgataaattacagagaatatcacatttttataaatattatatttttcaattaccacatattcccctctttattttactctaaagtcaaagtcaattgt |
300 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219913 |
cttgataaatttcagagaatatcatatttttataaatattatatttttcaattaccacatattcccctctttattttactctaaagtcaaagtcaattgt |
37220012 |
T |
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| Q |
301 |
aaaccctttccaaggtgacgaatatgtcctcacacaacctgcatccatag |
350 |
Q |
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| T |
37220013 |
aaaccctttccaaggtgacgaatatgtcctcacacaacctgcatccatag |
37220062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5095856 - 5095813
Alignment:
| Q |
6 |
ttggtgatattggtgacattggtcaaccacagtgtcacagatgt |
49 |
Q |
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| T |
5095856 |
ttggtgatattggtgacattggccaaccacaatgtcacaaatgt |
5095813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 6894143 - 6894105
Alignment:
| Q |
4 |
atttggtgatattggtgacattggtcaaccacagtgtca |
42 |
Q |
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| T |
6894143 |
atttggtgatattggtgacattgatcaaccacaatgtca |
6894105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 40580638 - 40580596
Alignment:
| Q |
6 |
ttggtgatattggtgacattggtcaaccacagtgtcacagatg |
48 |
Q |
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| T |
40580638 |
ttggtgatattggtaacattggtcaaccacaatgttacagatg |
40580596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 2913971 - 2913933
Alignment:
| Q |
6 |
ttggtgatattggtgacattggtcaaccacagtgtcaca |
44 |
Q |
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| T |
2913971 |
ttggtgatattggtgacgttgatcaaccacagtgtcaca |
2913933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 6539698 - 6539664
Alignment:
| Q |
10 |
tgatattggtgacattggtcaaccacagtgtcaca |
44 |
Q |
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| T |
6539698 |
tgatattggtgacattggtcaaccacaatgtcaca |
6539664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 9884856 - 9884894
Alignment:
| Q |
6 |
ttggtgatattggtgacattggtcaaccacagtgtcaca |
44 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| |
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| T |
9884856 |
ttggtgacattggtgacattggtcaaccacaatgtcaca |
9884894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44291191 - 44291153
Alignment:
| Q |
6 |
ttggtgatattggtgacattggtcaaccacagtgtcaca |
44 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |
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| T |
44291191 |
ttggttatattggtgacattggtcaaccacaatgtcaca |
44291153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 18321668 - 18321704
Alignment:
| Q |
8 |
ggtgatattggtgacattggtcaaccacagtgtcaca |
44 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |
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| T |
18321668 |
ggtgatattggtgacattggtcaatcacaatgtcaca |
18321704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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