View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_58 (Length: 364)
Name: NF9401_low_58
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 14146011 - 14146357
Alignment:
| Q |
1 |
tacattgttataaacaaaaccataaagatattgttctaaaattcatcttgcttcaacgtcccacccatcatttcttgggtgttgagacgaatgcacaact |
100 |
Q |
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| T |
14146011 |
tacattgttataaacaaaaccattaagatattgttctaaaattcatcttgcttcaacgtcccacccatcatttcttggatgttgagacgaatgcacaact |
14146110 |
T |
|
| Q |
101 |
aagaaaatgggaggaaaagaaaacatcnnnnnnnnnnnnnnnnnatgacatgtatccaaatcacatttgttcaccctaattctaacaaatatctcactat |
200 |
Q |
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| T |
14146111 |
aagaaaatgggaggaaaagaaaacatcatatatatacatatataatgacatgtatccaaatcacatttgttaaccgtaattctaacaaatatctcacgat |
14146210 |
T |
|
| Q |
201 |
caatccaaacatgtgtatcttattgtttcctccattatataannnnnnnncaatccgttgtaaaattacatactaacttgacataaaacgacatatacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14146211 |
caatccaaacatgtgtatcttattgtttcctccattatataattttttttcaatccgttgtaaaattacttactaacttgacataaaacgacatatacaa |
14146310 |
T |
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| Q |
301 |
acgatgtattcttgtctctaattttgtctctactgcttatgaatttatt |
349 |
Q |
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| T |
14146311 |
acgatgtattcttgtctctaa--ttgtctctactgcttatgaatttatt |
14146357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10252874 - 10252915
Alignment:
| Q |
1 |
tacattgttataaacaaaaccataaagatattgttctaaaat |
42 |
Q |
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| T |
10252874 |
tacattgttataatcaaaaccttaaagacattgttctaaaat |
10252915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7681557 - 7681501
Alignment:
| Q |
1 |
tacattgttataaacaaaaccataaagatattgttctaaaattcatcttgcttcaac |
57 |
Q |
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||||||||||| | ||||||| || |||||||||||||||| ||||||| |||||| |
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| T |
7681557 |
tacattgttatcatcaaaaccttagagatattgttctaaaacccatcttggttcaac |
7681501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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