View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_61 (Length: 363)
Name: NF9401_low_61
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_61 |
 | |
|
| [»] scaffold0651 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 345
Target Start/End: Complemental strand, 31321847 - 31321505
Alignment:
| Q |
3 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
31321847 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31321748 |
T |
|
| Q |
103 |
tatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321747 |
tatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
31321648 |
T |
|
| Q |
203 |
cttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattctct |
302 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
31321647 |
cttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctct |
31321548 |
T |
|
| Q |
303 |
ttgtcgattgaattcaatttgtagctgattcttccctctgttt |
345 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321547 |
ctgtcaattgaattcaatttgtagctgattcttccctctgttt |
31321505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 344
Target Start/End: Complemental strand, 31334100 - 31333759
Alignment:
| Q |
3 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
31334100 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31334001 |
T |
|
| Q |
103 |
tatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
31334000 |
tatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttctcactggtgttctcattaca |
31333901 |
T |
|
| Q |
203 |
cttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattctct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31333900 |
cttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctct |
31333801 |
T |
|
| Q |
303 |
ttgtcgattgaattcaatttgtagctgattcttccctctgtt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31333800 |
ttgtcgattgaattcaatttgtagctgattcttcgctctgtt |
31333759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 2010 - 2165
Alignment:
| Q |
189 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccag |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2010 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccgg |
2109 |
T |
|
| Q |
289 |
ctctcatattctctttgtcgattgaattcaatttgtagctgattcttccctctgtt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2110 |
ctctcatattctctttgtcgattgaattcaatttgtagctgattcttcgctctgtt |
2165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 22513564 - 22513672
Alignment:
| Q |
220 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccagctctcatattct-ctttgtcgattgaattca |
318 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||||||| | ||| || | ||||||||||| ||||||||||||||| | | | || |||||||||| |
|
|
| T |
22513564 |
cacttctgcgtgtttctacttcaactgttcctgctgctatcagaatcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaattca |
22513663 |
T |
|
| Q |
319 |
atttgtagc |
327 |
Q |
| |
|
||||||||| |
|
|
| T |
22513664 |
atttgtagc |
22513672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 39110498 - 39110404
Alignment:
| Q |
7 |
acaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaa |
101 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||||| ||||| || | ||||||| |||||| | ||||||||||||||||| |||||| |
|
|
| T |
39110498 |
acaacccttttgcttcccaactttctccattctcatcaactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 33521319 - 33521372
Alignment:
| Q |
206 |
aattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctat |
259 |
Q |
| |
|
||||||||| ||| |||||||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
33521319 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
33521372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University