View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_64 (Length: 356)
Name: NF9401_low_64
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 30860612 - 30860499
Alignment:
| Q |
10 |
gcagagatgaattggaagatgaagaagataataaaatggaggaa-tgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaattga |
108 |
Q |
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| T |
30860612 |
gcagagatgaattggaagatgaagaagataataaaatggaggaaatgatgatcccctgagtaattatgacctactccaacatgaagtgtttgggaattga |
30860513 |
T |
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| Q |
109 |
gagaattataatta |
122 |
Q |
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| T |
30860512 |
gagaattataatta |
30860499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 30860337 - 30860229
Alignment:
| Q |
230 |
aatattatgatcccaaatttcagtttttgttaagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa |
329 |
Q |
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| T |
30860337 |
aatattatgatcctaaatttcagtttttgtttagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa |
30860238 |
T |
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| Q |
330 |
tagacatgc |
338 |
Q |
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|||| |||| |
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| T |
30860237 |
tagatatgc |
30860229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 30861599 - 30861680
Alignment:
| Q |
42 |
aaaatggaggaa-tgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaattgagagaattataatta |
122 |
Q |
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| T |
30861599 |
aaaatggaggaaatgatgatcccttaagtgattatgaccttctccaacatgaattgtttgggaattgagagaattatgatta |
30861680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 5016856 - 5016893
Alignment:
| Q |
301 |
ttatgttgattcatatgcatatgtatgaatagacatgc |
338 |
Q |
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| T |
5016856 |
ttatgttgcttcatatgcatatgtatgaatatacatgc |
5016893 |
T |
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