View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_65 (Length: 355)
Name: NF9401_low_65
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8176586 - 8176235
Alignment:
| Q |
1 |
cacaaatgtaactaactatgtaatgcc-cgacgagatatgcaggagattgtttgagatcatatgagtggtgcaggttggatgagatgcgcttctgtgcag |
99 |
Q |
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| T |
8176586 |
cacaactgtaactaactatgtaatgcggcgacgagatatgcaggagattgtttgagatcatatgagtggtgcaggttggatgagatgcgcttctgtgcag |
8176487 |
T |
|
| Q |
100 |
tgaggcacgcatgaagtcttctatgttttcttgaatgacacggattatcgattaatgtgtagtcatgcattggatctatgatgtgggttgaggcccattc |
199 |
Q |
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| T |
8176486 |
tgaggcacgcatgaaatcttctatgttttcttgaatgacgtggattatcggttaatgtgtagtcatgcattggatttgtgatgtgggttgaggcccattc |
8176387 |
T |
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| Q |
200 |
cgaaacaattgccccaagcccttattgtctttatgacataagaagcttcagaaggagacaaccttgataacaacttatgactttgggcagagaatagttg |
299 |
Q |
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| T |
8176386 |
cgaaacaattgccccaagcccttattgtctttatgacataagaagcttcagaaggagacaagcttgataacaacttatgactttgggcagagcatagttg |
8176287 |
T |
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| Q |
300 |
agacatgtgcacctccgtcttt------atgatgcgttttgatattcctttg |
345 |
Q |
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| T |
8176286 |
agaaaagtgcacctccgtgtttatggagatgatgcgttttgatattcctttg |
8176235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 11748480 - 11748516
Alignment:
| Q |
211 |
ccccaagcccttattgtctttatgacataagaagctt |
247 |
Q |
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| T |
11748480 |
ccccaagcccttatcgtctttatgacgtaagaagctt |
11748516 |
T |
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