View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_66 (Length: 354)
Name: NF9401_low_66
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 40453576 - 40453351
Alignment:
| Q |
64 |
ctcctcctcctcccgtcaaaactctctgcaactactgttgttgcgatcccaccttcctcagcgcgcgctctttctccggaacccgatactaccaccaccg |
163 |
Q |
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| T |
40453576 |
ctcctcctcctcccgtcaaaactctctgcaactactgttgttgcgatcccaccttcctcagcgcgcgctctttctccggaacccgatactaccaccaccg |
40453477 |
T |
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| Q |
164 |
ttttcccgccaaaaccgtctcccactcgcacccgtccgggtttccaatcaatccgaaaatgacgacggttttctcctcgaggacgttccacacctcacca |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453476 |
ttttcccgccaaaaccgtctcccactcgcacccgtccgggtttccaatcaatccgaaaatgacgacggttttctcctcgaggacgttccacacctcacca |
40453377 |
T |
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| Q |
264 |
atttccttcccaatctgccggtactg |
289 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40453376 |
atttccttcccaatctgccggtactg |
40453351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 40453602 - 40453573
Alignment:
| Q |
47 |
cctccttcattttctctctcctcctcctcc |
76 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40453602 |
cctccttcattttctctctcctcctcctcc |
40453573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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