View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_70 (Length: 335)
Name: NF9401_low_70
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 6255309 - 6255619
Alignment:
| Q |
7 |
tttggtgttgcgactttaagaatccttttcagcattttgggtgtaccaatgcttggaacctttatatacactcttgtcaccgatggttctcctttccgta |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6255309 |
tttgttgttgcgactttaagaatccttttcagcattttgggtgttgttatgcttggaacctttatatacactcttgtcactgatggttctcctttccgta |
6255408 |
T |
|
| Q |
107 |
cagctattgactccgtaagttctcatgtaagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattactctcccattatatgta |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6255409 |
cagctattgactccgtaagttctcatgttagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattcctctcccattatatgta |
6255508 |
T |
|
| Q |
207 |
cttcttttagtagacatagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttcctaattaaattatt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6255509 |
cttcttttagtagacatagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttccaaattaaattatt |
6255608 |
T |
|
| Q |
307 |
caccaaagcaa |
317 |
Q |
| |
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||||||||||| |
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| T |
6255609 |
caccaaagcaa |
6255619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 51208493 - 51208198
Alignment:
| Q |
12 |
tgttgcgactttaagaatccttttcagcattttgggtgtaccaatgcttggaacctttatatacactcttgtcaccgatggttctcctttccgtacagct |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
51208493 |
tgttgcgactttaagaatccttttcagcattttgggtgttgttatgcttggaaccttgatatacac--------ctgatggttctcctttccgtacagct |
51208402 |
T |
|
| Q |
112 |
attgactccgtaagttctcatgtaagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattactctcccattatatgtacttct |
211 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
51208401 |
attgactccgtaagtgctcatataagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattcctctcccattatat--acttct |
51208304 |
T |
|
| Q |
212 |
tttagtagacatagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttcctaattaaattattcacca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51208303 |
tttagtagacatagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttcctaattaaattattcacca |
51208204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 43430929 - 43430624
Alignment:
| Q |
12 |
tgttgcgactttaagaatccttttcagcattttgggtgtaccaatgcttggaacctttatatacactcttgtcaccgatggttctcctttccgtacag-- |
109 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||| |
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| T |
43430929 |
tgttgcgactttaaaaatccttttcagcattttgggtgttgttatgcttggaactttaatatacattcttgtcactgatggttctcctttccgtacagag |
43430830 |
T |
|
| Q |
110 |
ctattgactccgtaagttctcatgtaagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattactctcccattatatgtactt |
209 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
43430829 |
ctattgacttcgtaagtgctcatataagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattcctctcccattatat--actt |
43430732 |
T |
|
| Q |
210 |
cttttagtagacatagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttcctaattaaattattcac |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43430731 |
cttttagtagacatagattgtggtgtggtcaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcatttttctaattaaattattcac |
43430632 |
T |
|
| Q |
310 |
caaagcaa |
317 |
Q |
| |
|
|||||||| |
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|
| T |
43430631 |
caaagcaa |
43430624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 43955877 - 43956065
Alignment:
| Q |
12 |
tgttgcgactttaagaatccttttcagcattttgggtgtaccaatgcttggaacctttatatacactcttgtcaccgatggttctcctttccgtacag-- |
109 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
43955877 |
tgttgcgactctaagaatccttttcggcattttgggtgttgtcatgcttggaaccttggtatacactcttgtcactgatggttctcctttccgtacagag |
43955976 |
T |
|
| Q |
110 |
ctattgactccgtaagttctcatgtaagcatgaactgcgtgaatggagcatacattttcttcttgttaaaaggaacattactctcccat |
198 |
Q |
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||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
43955977 |
ctattgactccgtaagtgctcatataagcatgaactgcgtaaatggagaatacattttcttcttgttaaaaggaatattcctctcccat |
43956065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 43956241 - 43956337
Alignment:
| Q |
221 |
catagattgtggtgtggacaatattgaatttgaaagttgtgatttattaagtgcttttcattcttcattttcctaattaaattattcaccaaagcaa |
317 |
Q |
| |
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||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| | |||||||||||||||| || || |||||||||| |||| |
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| T |
43956241 |
catagattgcagtgtggacaacattgattttgaaagttgtgatttataaagtgcttataattcttcattttcctagttgaaatattcaccaaggcaa |
43956337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 43962280 - 43962374
Alignment:
| Q |
12 |
tgttgcgactttaagaatccttttcagcattttgggtgtaccaatgcttggaacctttatatacactcttgtcaccgatggttctcctttccgta |
106 |
Q |
| |
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||||| |||| ||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
43962280 |
tgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttagggtacacgcttgtcaccgatggttctcctttccgta |
43962374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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